Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04545 and MPMX19_04546 are separated by 119 nucleotides MPMX19_04546 and MPMX19_04547 are separated by 63 nucleotides MPMX19_04547 and MPMX19_04548 are separated by 137 nucleotides
MPMX19_04545: MPMX19_04545 - hypothetical protein, at 920,529 to 921,206
_04545
MPMX19_04546: MPMX19_04546 - Glutamine transport ATP-binding protein GlnQ, at 921,326 to 922,054
_04546
MPMX19_04547: MPMX19_04547 - D-amino acid dehydrogenase, at 922,118 to 925,087
_04547
MPMX19_04548: MPMX19_04548 - 4-hydroxy-tetrahydrodipicolinate synthase, at 925,225 to 926,118
_04548
Position (kb) 922
923
924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 921.134 kb on - strand, within MPMX19_04545 at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.206 kb on + strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.207 kb on - strand at 921.297 kb on + strand at 921.864 kb on + strand, within MPMX19_04546 at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.023 kb on + strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.024 kb on - strand at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.770 kb on + strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.771 kb on - strand, within MPMX19_04547 at 922.812 kb on + strand, within MPMX19_04547 at 922.812 kb on + strand, within MPMX19_04547 at 922.813 kb on - strand, within MPMX19_04547 at 922.813 kb on - strand, within MPMX19_04547 at 922.896 kb on + strand, within MPMX19_04547 at 922.896 kb on + strand, within MPMX19_04547 at 922.897 kb on - strand, within MPMX19_04547 at 923.205 kb on + strand, within MPMX19_04547 at 923.205 kb on + strand, within MPMX19_04547 at 923.205 kb on + strand, within MPMX19_04547 at 923.205 kb on + strand, within MPMX19_04547 at 923.206 kb on - strand, within MPMX19_04547 at 923.206 kb on - strand, within MPMX19_04547 at 923.206 kb on - strand, within MPMX19_04547 at 923.206 kb on - strand, within MPMX19_04547 at 923.206 kb on - strand, within MPMX19_04547 at 923.206 kb on - strand, within MPMX19_04547 at 923.206 kb on - strand, within MPMX19_04547 at 923.206 kb on - strand, within MPMX19_04547 at 923.208 kb on + strand, within MPMX19_04547 at 923.208 kb on + strand, within MPMX19_04547 at 923.208 kb on + strand, within MPMX19_04547 at 923.208 kb on + strand, within MPMX19_04547 at 923.208 kb on + strand, within MPMX19_04547 at 923.208 kb on + strand, within MPMX19_04547 at 923.208 kb on + strand, within MPMX19_04547 at 923.209 kb on - strand, within MPMX19_04547 at 923.209 kb on - strand, within MPMX19_04547 at 923.209 kb on - strand, within MPMX19_04547 at 923.209 kb on - strand, within MPMX19_04547 at 923.209 kb on - strand, within MPMX19_04547 at 923.209 kb on - strand, within MPMX19_04547 at 923.209 kb on - strand, within MPMX19_04547 at 923.397 kb on + strand, within MPMX19_04547 at 923.397 kb on + strand, within MPMX19_04547 at 923.397 kb on + strand, within MPMX19_04547 at 923.397 kb on + strand, within MPMX19_04547 at 923.398 kb on - strand, within MPMX19_04547 at 923.398 kb on - strand, within MPMX19_04547 at 923.398 kb on - strand, within MPMX19_04547 at 923.463 kb on + strand, within MPMX19_04547 at 923.464 kb on - strand, within MPMX19_04547 at 923.631 kb on + strand, within MPMX19_04547 at 923.631 kb on + strand, within MPMX19_04547 at 923.631 kb on + strand, within MPMX19_04547 at 923.631 kb on + strand, within MPMX19_04547 at 923.631 kb on + strand, within MPMX19_04547 at 923.631 kb on + strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.632 kb on - strand, within MPMX19_04547 at 923.862 kb on + strand, within MPMX19_04547 at 923.862 kb on + strand, within MPMX19_04547 at 923.941 kb on - strand, within MPMX19_04547 at 924.019 kb on - strand, within MPMX19_04547 at 924.019 kb on - strand, within MPMX19_04547 at 924.019 kb on - strand, within MPMX19_04547 at 924.019 kb on - strand, within MPMX19_04547 at 924.123 kb on + strand, within MPMX19_04547 at 924.402 kb on + strand, within MPMX19_04547 at 924.403 kb on - strand, within MPMX19_04547 at 924.403 kb on - strand, within MPMX19_04547 at 924.403 kb on - strand, within MPMX19_04547 at 924.438 kb on + strand, within MPMX19_04547 at 924.439 kb on - strand, within MPMX19_04547 at 924.621 kb on + strand, within MPMX19_04547 at 924.621 kb on + strand, within MPMX19_04547 at 924.622 kb on - strand, within MPMX19_04547 at 924.622 kb on - strand, within MPMX19_04547 at 924.622 kb on - strand, within MPMX19_04547 at 924.622 kb on - strand, within MPMX19_04547 at 924.622 kb on - strand, within MPMX19_04547 at 924.803 kb on - strand at 924.921 kb on + strand at 924.922 kb on - strand at 924.922 kb on - strand at 924.958 kb on - strand at 924.958 kb on - strand at 925.032 kb on + strand at 925.032 kb on + strand at 925.033 kb on - strand at 925.033 kb on - strand at 925.033 kb on - strand at 925.033 kb on - strand at 925.033 kb on - strand at 925.143 kb on + strand at 925.246 kb on + strand at 925.246 kb on + strand at 925.247 kb on - strand at 925.247 kb on - strand at 925.247 kb on - strand at 925.247 kb on - strand at 925.549 kb on + strand, within MPMX19_04548 at 925.549 kb on + strand, within MPMX19_04548 at 925.552 kb on + strand, within MPMX19_04548 at 925.552 kb on + strand, within MPMX19_04548 at 925.552 kb on + strand, within MPMX19_04548 at 925.552 kb on + strand, within MPMX19_04548 at 925.552 kb on + strand, within MPMX19_04548 at 925.553 kb on - strand, within MPMX19_04548 at 925.553 kb on - strand, within MPMX19_04548 at 925.553 kb on - strand, within MPMX19_04548 at 925.553 kb on - strand, within MPMX19_04548 at 925.553 kb on - strand, within MPMX19_04548 at 925.588 kb on + strand, within MPMX19_04548 at 925.630 kb on + strand, within MPMX19_04548 at 925.630 kb on + strand, within MPMX19_04548 at 925.630 kb on + strand, within MPMX19_04548 at 925.630 kb on + strand, within MPMX19_04548 at 925.630 kb on + strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.631 kb on - strand, within MPMX19_04548 at 925.708 kb on + strand, within MPMX19_04548 at 925.708 kb on + strand, within MPMX19_04548 at 925.708 kb on + strand, within MPMX19_04548 at 925.708 kb on + strand, within MPMX19_04548 at 925.708 kb on + strand, within MPMX19_04548 at 925.708 kb on + strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.709 kb on - strand, within MPMX19_04548 at 925.927 kb on + strand, within MPMX19_04548 at 925.927 kb on + strand, within MPMX19_04548 at 925.928 kb on - strand, within MPMX19_04548 at 925.928 kb on - strand, within MPMX19_04548 at 925.973 kb on - strand, within MPMX19_04548
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 921,134 - MPMX19_04545 0.89 -0.7 921,206 + -2.6 921,206 + -0.4 921,206 + +0.8 921,206 + +0.8 921,206 + -1.6 921,206 + -0.7 921,206 + -0.3 921,206 + -1.2 921,207 - -0.2 921,207 - -0.0 921,207 - -0.6 921,207 - -0.6 921,207 - +0.1 921,207 - +0.2 921,297 + +0.2 921,864 + MPMX19_04546 0.74 +1.4 922,023 + +1.4 922,023 + +0.3 922,023 + -0.6 922,023 + +0.2 922,023 + +0.4 922,024 - +0.0 922,024 - -1.4 922,024 - -0.7 922,024 - +0.5 922,024 - -0.4 922,770 + MPMX19_04547 0.22 -2.2 922,770 + MPMX19_04547 0.22 -1.6 922,770 + MPMX19_04547 0.22 -0.8 922,770 + MPMX19_04547 0.22 -2.1 922,770 + MPMX19_04547 0.22 -0.5 922,770 + MPMX19_04547 0.22 +0.0 922,770 + MPMX19_04547 0.22 -0.6 922,770 + MPMX19_04547 0.22 +0.6 922,771 - MPMX19_04547 0.22 -0.3 922,771 - MPMX19_04547 0.22 -1.7 922,771 - MPMX19_04547 0.22 -1.2 922,771 - MPMX19_04547 0.22 -0.6 922,771 - MPMX19_04547 0.22 -1.2 922,771 - MPMX19_04547 0.22 -0.1 922,771 - MPMX19_04547 0.22 +0.2 922,771 - MPMX19_04547 0.22 -0.1 922,771 - MPMX19_04547 0.22 -0.7 922,771 - MPMX19_04547 0.22 -0.9 922,771 - MPMX19_04547 0.22 -0.4 922,771 - MPMX19_04547 0.22 -1.1 922,771 - MPMX19_04547 0.22 -2.7 922,771 - MPMX19_04547 0.22 -1.9 922,771 - MPMX19_04547 0.22 -1.0 922,771 - MPMX19_04547 0.22 -0.8 922,771 - MPMX19_04547 0.22 +0.3 922,771 - MPMX19_04547 0.22 -1.0 922,771 - MPMX19_04547 0.22 -0.0 922,771 - MPMX19_04547 0.22 -0.3 922,771 - MPMX19_04547 0.22 -1.2 922,812 + MPMX19_04547 0.23 -1.3 922,812 + MPMX19_04547 0.23 -1.2 922,813 - MPMX19_04547 0.23 +0.8 922,813 - MPMX19_04547 0.23 +0.4 922,896 + MPMX19_04547 0.26 -2.1 922,896 + MPMX19_04547 0.26 +1.1 922,897 - MPMX19_04547 0.26 -0.8 923,205 + MPMX19_04547 0.37 -0.7 923,205 + MPMX19_04547 0.37 -0.2 923,205 + MPMX19_04547 0.37 -0.0 923,205 + MPMX19_04547 0.37 +0.1 923,206 - MPMX19_04547 0.37 -0.8 923,206 - MPMX19_04547 0.37 -0.1 923,206 - MPMX19_04547 0.37 +0.5 923,206 - MPMX19_04547 0.37 -0.8 923,206 - MPMX19_04547 0.37 +1.2 923,206 - MPMX19_04547 0.37 -1.1 923,206 - MPMX19_04547 0.37 -0.2 923,206 - MPMX19_04547 0.37 -0.5 923,208 + MPMX19_04547 0.37 -1.7 923,208 + MPMX19_04547 0.37 -1.4 923,208 + MPMX19_04547 0.37 -1.1 923,208 + MPMX19_04547 0.37 -1.6 923,208 + MPMX19_04547 0.37 -0.1 923,208 + MPMX19_04547 0.37 -0.0 923,208 + MPMX19_04547 0.37 -0.6 923,209 - MPMX19_04547 0.37 -0.2 923,209 - MPMX19_04547 0.37 -0.4 923,209 - MPMX19_04547 0.37 -0.3 923,209 - MPMX19_04547 0.37 -0.9 923,209 - MPMX19_04547 0.37 +0.8 923,209 - MPMX19_04547 0.37 +0.2 923,209 - MPMX19_04547 0.37 -0.5 923,397 + MPMX19_04547 0.43 -1.6 923,397 + MPMX19_04547 0.43 -0.2 923,397 + MPMX19_04547 0.43 -1.0 923,397 + MPMX19_04547 0.43 +0.3 923,398 - MPMX19_04547 0.43 -0.4 923,398 - MPMX19_04547 0.43 -0.6 923,398 - MPMX19_04547 0.43 -1.0 923,463 + MPMX19_04547 0.45 -0.2 923,464 - MPMX19_04547 0.45 +0.2 923,631 + MPMX19_04547 0.51 +0.0 923,631 + MPMX19_04547 0.51 -0.9 923,631 + MPMX19_04547 0.51 -0.4 923,631 + MPMX19_04547 0.51 -1.4 923,631 + MPMX19_04547 0.51 -0.6 923,631 + MPMX19_04547 0.51 -0.8 923,632 - MPMX19_04547 0.51 -0.8 923,632 - MPMX19_04547 0.51 +1.0 923,632 - MPMX19_04547 0.51 -0.9 923,632 - MPMX19_04547 0.51 -0.1 923,632 - MPMX19_04547 0.51 -1.9 923,632 - MPMX19_04547 0.51 +1.4 923,632 - MPMX19_04547 0.51 +0.3 923,632 - MPMX19_04547 0.51 +0.8 923,632 - MPMX19_04547 0.51 -1.0 923,632 - MPMX19_04547 0.51 -0.2 923,632 - MPMX19_04547 0.51 -0.1 923,632 - MPMX19_04547 0.51 +0.6 923,862 + MPMX19_04547 0.59 +0.0 923,862 + MPMX19_04547 0.59 -1.6 923,941 - MPMX19_04547 0.61 -0.8 924,019 - MPMX19_04547 0.64 -1.6 924,019 - MPMX19_04547 0.64 -1.6 924,019 - MPMX19_04547 0.64 -0.9 924,019 - MPMX19_04547 0.64 +0.8 924,123 + MPMX19_04547 0.68 -1.1 924,402 + MPMX19_04547 0.77 -2.1 924,403 - MPMX19_04547 0.77 -1.4 924,403 - MPMX19_04547 0.77 -0.8 924,403 - MPMX19_04547 0.77 -0.6 924,438 + MPMX19_04547 0.78 -0.2 924,439 - MPMX19_04547 0.78 +0.5 924,621 + MPMX19_04547 0.84 -0.6 924,621 + MPMX19_04547 0.84 -1.1 924,622 - MPMX19_04547 0.84 +0.1 924,622 - MPMX19_04547 0.84 -0.8 924,622 - MPMX19_04547 0.84 -1.8 924,622 - MPMX19_04547 0.84 -0.8 924,622 - MPMX19_04547 0.84 -0.8 924,803 - -1.1 924,921 + -1.4 924,922 - -0.4 924,922 - +0.8 924,958 - +0.1 924,958 - -0.2 925,032 + -0.7 925,032 + -1.8 925,033 - +0.0 925,033 - -0.5 925,033 - -0.9 925,033 - -0.9 925,033 - -1.2 925,143 + -0.7 925,246 + -0.2 925,246 + -0.8 925,247 - -3.0 925,247 - -0.4 925,247 - -0.7 925,247 - -0.7 925,549 + MPMX19_04548 0.36 -0.6 925,549 + MPMX19_04548 0.36 -1.9 925,552 + MPMX19_04548 0.37 -1.3 925,552 + MPMX19_04548 0.37 -2.1 925,552 + MPMX19_04548 0.37 -0.8 925,552 + MPMX19_04548 0.37 -0.4 925,552 + MPMX19_04548 0.37 -0.9 925,553 - MPMX19_04548 0.37 -1.3 925,553 - MPMX19_04548 0.37 +0.0 925,553 - MPMX19_04548 0.37 +0.1 925,553 - MPMX19_04548 0.37 +0.8 925,553 - MPMX19_04548 0.37 +0.4 925,588 + MPMX19_04548 0.41 -0.3 925,630 + MPMX19_04548 0.45 +0.2 925,630 + MPMX19_04548 0.45 -1.3 925,630 + MPMX19_04548 0.45 +0.8 925,630 + MPMX19_04548 0.45 -0.7 925,630 + MPMX19_04548 0.45 -0.5 925,631 - MPMX19_04548 0.45 +0.6 925,631 - MPMX19_04548 0.45 +0.2 925,631 - MPMX19_04548 0.45 +0.8 925,631 - MPMX19_04548 0.45 -1.7 925,631 - MPMX19_04548 0.45 -1.5 925,631 - MPMX19_04548 0.45 -1.7 925,631 - MPMX19_04548 0.45 -0.6 925,631 - MPMX19_04548 0.45 +0.8 925,631 - MPMX19_04548 0.45 +0.1 925,631 - MPMX19_04548 0.45 +1.4 925,631 - MPMX19_04548 0.45 -0.8 925,631 - MPMX19_04548 0.45 -1.7 925,631 - MPMX19_04548 0.45 +1.0 925,631 - MPMX19_04548 0.45 -0.8 925,631 - MPMX19_04548 0.45 -2.4 925,631 - MPMX19_04548 0.45 -1.5 925,708 + MPMX19_04548 0.54 -2.2 925,708 + MPMX19_04548 0.54 +0.5 925,708 + MPMX19_04548 0.54 +1.0 925,708 + MPMX19_04548 0.54 -1.2 925,708 + MPMX19_04548 0.54 +0.8 925,708 + MPMX19_04548 0.54 +0.3 925,709 - MPMX19_04548 0.54 -0.2 925,709 - MPMX19_04548 0.54 +0.3 925,709 - MPMX19_04548 0.54 -0.2 925,709 - MPMX19_04548 0.54 +0.4 925,709 - MPMX19_04548 0.54 -1.0 925,709 - MPMX19_04548 0.54 -1.8 925,709 - MPMX19_04548 0.54 +0.8 925,709 - MPMX19_04548 0.54 +0.4 925,709 - MPMX19_04548 0.54 -1.6 925,927 + MPMX19_04548 0.79 -0.0 925,927 + MPMX19_04548 0.79 -1.0 925,928 - MPMX19_04548 0.79 +0.5 925,928 - MPMX19_04548 0.79 -0.0 925,973 - MPMX19_04548 0.84 -0.0
Or see this region's nucleotide sequence