Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04541 and MPMX19_04542 overlap by 4 nucleotides MPMX19_04542 and MPMX19_04543 are separated by 177 nucleotides MPMX19_04543 and MPMX19_04544 are separated by 141 nucleotides
MPMX19_04541: MPMX19_04541 - Lipopolysaccharide export system ATP-binding protein LptB, at 914,342 to 915,175
_04541
MPMX19_04542: MPMX19_04542 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 915,172 to 915,897
_04542
MPMX19_04543: MPMX19_04543 - hypothetical protein, at 916,075 to 916,809
_04543
MPMX19_04544: MPMX19_04544 - hypothetical protein, at 916,951 to 920,484
_04544
Position (kb) 916
917 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 915.077 kb on + strand, within MPMX19_04541 at 915.077 kb on + strand, within MPMX19_04541 at 915.078 kb on - strand, within MPMX19_04541 at 915.205 kb on + strand at 915.205 kb on + strand at 915.205 kb on + strand at 915.206 kb on - strand at 915.206 kb on - strand at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.418 kb on + strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.419 kb on - strand, within MPMX19_04542 at 915.538 kb on + strand, within MPMX19_04542 at 915.539 kb on - strand, within MPMX19_04542 at 915.793 kb on + strand, within MPMX19_04542 at 915.793 kb on + strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.794 kb on - strand, within MPMX19_04542 at 915.871 kb on + strand at 915.871 kb on + strand at 915.871 kb on + strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.872 kb on - strand at 915.932 kb on + strand at 915.932 kb on + strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.933 kb on - strand at 915.934 kb on + strand at 915.935 kb on - strand at 915.935 kb on - strand at 915.946 kb on + strand at 915.961 kb on - strand at 915.961 kb on - strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.065 kb on + strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.066 kb on - strand at 916.330 kb on + strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.331 kb on - strand, within MPMX19_04543 at 916.729 kb on - strand, within MPMX19_04543 at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.786 kb on + strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.787 kb on - strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 916.999 kb on + strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.000 kb on - strand at 917.302 kb on + strand at 917.303 kb on - strand at 917.303 kb on - strand at 917.446 kb on + strand, within MPMX19_04544 at 917.447 kb on - strand, within MPMX19_04544 at 917.447 kb on - strand, within MPMX19_04544 at 917.509 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.743 kb on + strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544 at 917.744 kb on - strand, within MPMX19_04544
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 915,077 + MPMX19_04541 0.88 -0.3 915,077 + MPMX19_04541 0.88 -2.1 915,078 - MPMX19_04541 0.88 -0.4 915,205 + -1.2 915,205 + -1.8 915,205 + +0.0 915,206 - -0.8 915,206 - -0.3 915,418 + MPMX19_04542 0.34 -0.0 915,418 + MPMX19_04542 0.34 -0.7 915,418 + MPMX19_04542 0.34 -1.4 915,418 + MPMX19_04542 0.34 +0.8 915,418 + MPMX19_04542 0.34 +0.6 915,418 + MPMX19_04542 0.34 -1.4 915,418 + MPMX19_04542 0.34 -1.3 915,418 + MPMX19_04542 0.34 -1.6 915,418 + MPMX19_04542 0.34 -0.4 915,418 + MPMX19_04542 0.34 -0.6 915,418 + MPMX19_04542 0.34 -1.7 915,418 + MPMX19_04542 0.34 -1.0 915,418 + MPMX19_04542 0.34 -0.5 915,418 + MPMX19_04542 0.34 -0.5 915,418 + MPMX19_04542 0.34 -0.0 915,419 - MPMX19_04542 0.34 -0.5 915,419 - MPMX19_04542 0.34 +0.5 915,419 - MPMX19_04542 0.34 -1.4 915,419 - MPMX19_04542 0.34 -0.5 915,419 - MPMX19_04542 0.34 -0.8 915,419 - MPMX19_04542 0.34 -0.6 915,419 - MPMX19_04542 0.34 +0.1 915,419 - MPMX19_04542 0.34 +0.0 915,419 - MPMX19_04542 0.34 +0.2 915,419 - MPMX19_04542 0.34 +0.5 915,419 - MPMX19_04542 0.34 -1.6 915,419 - MPMX19_04542 0.34 -0.2 915,419 - MPMX19_04542 0.34 +0.2 915,538 + MPMX19_04542 0.50 +0.6 915,539 - MPMX19_04542 0.51 +0.2 915,793 + MPMX19_04542 0.86 +0.2 915,793 + MPMX19_04542 0.86 +0.8 915,794 - MPMX19_04542 0.86 -0.1 915,794 - MPMX19_04542 0.86 -0.8 915,794 - MPMX19_04542 0.86 -1.0 915,794 - MPMX19_04542 0.86 -0.1 915,794 - MPMX19_04542 0.86 -0.8 915,794 - MPMX19_04542 0.86 -1.0 915,871 + -0.6 915,871 + -0.7 915,871 + -0.7 915,872 - +0.3 915,872 - -0.1 915,872 - +0.4 915,872 - -0.5 915,872 - -0.1 915,932 + -1.3 915,932 + -1.3 915,933 - -0.5 915,933 - -0.8 915,933 - +0.2 915,933 - -1.4 915,933 - +0.8 915,933 - -1.6 915,934 + +1.5 915,935 - +0.6 915,935 - -0.3 915,946 + -0.8 915,961 - -1.9 915,961 - -0.9 916,065 + -0.7 916,065 + -1.7 916,065 + -2.1 916,065 + +0.3 916,065 + -0.4 916,065 + +1.1 916,065 + +0.8 916,065 + -2.3 916,066 - +1.5 916,066 - -0.6 916,066 - +1.5 916,066 - +0.2 916,066 - -0.2 916,330 + MPMX19_04543 0.35 -0.8 916,331 - MPMX19_04543 0.35 -0.7 916,331 - MPMX19_04543 0.35 -1.0 916,331 - MPMX19_04543 0.35 -1.0 916,729 - MPMX19_04543 0.89 +0.2 916,786 + -0.2 916,786 + -0.2 916,786 + +0.0 916,786 + -0.0 916,786 + -0.6 916,786 + -0.9 916,786 + -0.9 916,786 + -0.1 916,786 + -0.0 916,786 + -1.1 916,786 + -0.5 916,786 + -0.6 916,786 + -1.0 916,786 + -0.3 916,786 + -0.4 916,786 + -0.8 916,786 + +0.4 916,786 + -2.6 916,786 + +0.8 916,786 + +0.0 916,786 + -0.3 916,786 + -0.5 916,786 + -0.2 916,787 - +1.0 916,787 - -0.7 916,787 - -1.0 916,787 - -2.2 916,787 - -1.9 916,787 - -0.7 916,787 - -1.8 916,787 - -1.0 916,787 - -0.2 916,787 - -0.5 916,787 - -1.7 916,787 - -0.5 916,787 - -0.6 916,787 - +0.2 916,787 - -2.3 916,999 + -0.4 916,999 + -0.7 916,999 + -0.8 916,999 + -1.3 916,999 + +0.8 916,999 + -0.7 916,999 + +0.1 916,999 + -0.0 916,999 + -2.2 916,999 + -0.4 916,999 + -0.6 916,999 + -1.7 916,999 + +1.4 917,000 - +1.2 917,000 - +0.0 917,000 - -0.0 917,000 - -0.4 917,000 - +0.7 917,302 + +0.3 917,303 - -0.2 917,303 - -1.2 917,446 + MPMX19_04544 0.14 -0.6 917,447 - MPMX19_04544 0.14 -1.8 917,447 - MPMX19_04544 0.14 -1.1 917,509 + MPMX19_04544 0.16 -1.4 917,743 + MPMX19_04544 0.22 -2.9 917,743 + MPMX19_04544 0.22 -0.6 917,743 + MPMX19_04544 0.22 -1.2 917,743 + MPMX19_04544 0.22 -1.2 917,743 + MPMX19_04544 0.22 -0.9 917,743 + MPMX19_04544 0.22 -1.0 917,743 + MPMX19_04544 0.22 +0.6 917,743 + MPMX19_04544 0.22 -0.6 917,743 + MPMX19_04544 0.22 -1.2 917,744 - MPMX19_04544 0.22 -0.6 917,744 - MPMX19_04544 0.22 -0.6 917,744 - MPMX19_04544 0.22 -1.0 917,744 - MPMX19_04544 0.22 +0.1 917,744 - MPMX19_04544 0.22 +0.6 917,744 - MPMX19_04544 0.22 -1.2 917,744 - MPMX19_04544 0.22 -0.7 917,744 - MPMX19_04544 0.22 -2.4 917,744 - MPMX19_04544 0.22 -0.0
Or see this region's nucleotide sequence