Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04401 and MPMX19_04402 are separated by 188 nucleotides MPMX19_04402 and MPMX19_04403 are separated by 172 nucleotides MPMX19_04403 and MPMX19_04404 are separated by 73 nucleotides MPMX19_04404 and MPMX19_04405 are separated by 221 nucleotides
MPMX19_04401: MPMX19_04401 - hypothetical protein, at 767,198 to 768,652
_04401
MPMX19_04402: MPMX19_04402 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 768,841 to 769,539
_04402
MPMX19_04403: MPMX19_04403 - hypothetical protein, at 769,712 to 770,116
_04403
MPMX19_04404: MPMX19_04404 - tRNA-Pro, at 770,190 to 770,266
_04404
MPMX19_04405: MPMX19_04405 - tRNA-Pro, at 770,488 to 770,564
_04405
Position (kb) 768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 768.137 kb on + strand, within MPMX19_04401 at 768.137 kb on + strand, within MPMX19_04401 at 768.137 kb on + strand, within MPMX19_04401 at 768.137 kb on + strand, within MPMX19_04401 at 768.137 kb on + strand, within MPMX19_04401 at 768.137 kb on + strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.138 kb on - strand, within MPMX19_04401 at 768.188 kb on + strand, within MPMX19_04401 at 768.188 kb on + strand, within MPMX19_04401 at 768.188 kb on + strand, within MPMX19_04401 at 768.188 kb on + strand, within MPMX19_04401 at 768.189 kb on - strand, within MPMX19_04401 at 768.189 kb on - strand, within MPMX19_04401 at 768.189 kb on - strand, within MPMX19_04401 at 768.189 kb on - strand, within MPMX19_04401 at 768.189 kb on - strand, within MPMX19_04401 at 768.189 kb on - strand, within MPMX19_04401 at 768.189 kb on - strand, within MPMX19_04401 at 768.239 kb on + strand, within MPMX19_04401 at 768.239 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.241 kb on + strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.242 kb on - strand, within MPMX19_04401 at 768.356 kb on + strand, within MPMX19_04401 at 768.357 kb on - strand, within MPMX19_04401 at 768.357 kb on - strand, within MPMX19_04401 at 768.357 kb on - strand, within MPMX19_04401 at 768.383 kb on + strand, within MPMX19_04401 at 768.384 kb on - strand, within MPMX19_04401 at 768.455 kb on + strand, within MPMX19_04401 at 768.456 kb on - strand, within MPMX19_04401 at 768.456 kb on - strand, within MPMX19_04401 at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.722 kb on + strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.723 kb on - strand at 768.732 kb on + strand at 768.733 kb on - strand at 768.733 kb on - strand at 768.850 kb on + strand at 768.850 kb on + strand at 768.851 kb on - strand at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.946 kb on + strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.947 kb on - strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.967 kb on + strand, within MPMX19_04402 at 768.968 kb on - strand, within MPMX19_04402 at 768.968 kb on - strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.120 kb on + strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.121 kb on - strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.147 kb on + strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.148 kb on - strand, within MPMX19_04402 at 769.283 kb on - strand, within MPMX19_04402 at 769.283 kb on - strand, within MPMX19_04402 at 769.471 kb on + strand at 769.471 kb on + strand at 769.471 kb on + strand at 769.472 kb on - strand at 769.588 kb on - strand at 769.602 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.639 kb on + strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.640 kb on - strand at 769.681 kb on + strand at 769.681 kb on + strand at 769.681 kb on + strand at 769.682 kb on - strand at 769.682 kb on - strand at 769.682 kb on - strand at 769.728 kb on + strand at 769.728 kb on + strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.729 kb on - strand at 769.730 kb on + strand at 769.730 kb on + strand at 769.731 kb on - strand at 769.731 kb on - strand at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.919 kb on + strand, within MPMX19_04403 at 769.920 kb on - strand, within MPMX19_04403 at 769.920 kb on - strand, within MPMX19_04403 at 769.924 kb on + strand, within MPMX19_04403 at 769.924 kb on + strand, within MPMX19_04403 at 769.925 kb on - strand, within MPMX19_04403 at 769.925 kb on - strand, within MPMX19_04403 at 769.983 kb on - strand, within MPMX19_04403 at 770.012 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.036 kb on + strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.037 kb on - strand, within MPMX19_04403 at 770.130 kb on - strand at 770.189 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.295 kb on - strand at 770.324 kb on + strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.325 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.327 kb on - strand at 770.396 kb on + strand at 770.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 768,137 + MPMX19_04401 0.65 +0.6 768,137 + MPMX19_04401 0.65 -0.2 768,137 + MPMX19_04401 0.65 -0.8 768,137 + MPMX19_04401 0.65 -1.7 768,137 + MPMX19_04401 0.65 -0.8 768,137 + MPMX19_04401 0.65 -1.1 768,138 - MPMX19_04401 0.65 -0.5 768,138 - MPMX19_04401 0.65 -0.2 768,138 - MPMX19_04401 0.65 -0.4 768,138 - MPMX19_04401 0.65 -0.6 768,138 - MPMX19_04401 0.65 +0.2 768,138 - MPMX19_04401 0.65 +1.8 768,138 - MPMX19_04401 0.65 -2.6 768,138 - MPMX19_04401 0.65 +0.2 768,138 - MPMX19_04401 0.65 +0.9 768,188 + MPMX19_04401 0.68 -1.0 768,188 + MPMX19_04401 0.68 -0.5 768,188 + MPMX19_04401 0.68 -1.5 768,188 + MPMX19_04401 0.68 -0.1 768,189 - MPMX19_04401 0.68 +0.0 768,189 - MPMX19_04401 0.68 -0.4 768,189 - MPMX19_04401 0.68 -1.0 768,189 - MPMX19_04401 0.68 -1.2 768,189 - MPMX19_04401 0.68 -0.6 768,189 - MPMX19_04401 0.68 +0.2 768,189 - MPMX19_04401 0.68 +0.1 768,239 + MPMX19_04401 0.72 -1.2 768,239 + MPMX19_04401 0.72 -0.2 768,241 + MPMX19_04401 0.72 -0.1 768,241 + MPMX19_04401 0.72 -1.2 768,241 + MPMX19_04401 0.72 -1.3 768,241 + MPMX19_04401 0.72 -1.3 768,241 + MPMX19_04401 0.72 -1.0 768,241 + MPMX19_04401 0.72 -1.9 768,241 + MPMX19_04401 0.72 +0.2 768,241 + MPMX19_04401 0.72 -0.4 768,241 + MPMX19_04401 0.72 +0.2 768,241 + MPMX19_04401 0.72 -1.1 768,241 + MPMX19_04401 0.72 -0.2 768,241 + MPMX19_04401 0.72 -1.6 768,241 + MPMX19_04401 0.72 -1.1 768,241 + MPMX19_04401 0.72 -1.7 768,241 + MPMX19_04401 0.72 -1.1 768,241 + MPMX19_04401 0.72 +0.5 768,241 + MPMX19_04401 0.72 -0.3 768,241 + MPMX19_04401 0.72 -0.2 768,241 + MPMX19_04401 0.72 -1.2 768,241 + MPMX19_04401 0.72 +0.5 768,241 + MPMX19_04401 0.72 -1.2 768,242 - MPMX19_04401 0.72 +0.5 768,242 - MPMX19_04401 0.72 -1.7 768,242 - MPMX19_04401 0.72 -1.8 768,242 - MPMX19_04401 0.72 +0.8 768,242 - MPMX19_04401 0.72 -2.2 768,242 - MPMX19_04401 0.72 +0.4 768,242 - MPMX19_04401 0.72 -0.8 768,242 - MPMX19_04401 0.72 -1.4 768,242 - MPMX19_04401 0.72 -0.6 768,242 - MPMX19_04401 0.72 +0.0 768,242 - MPMX19_04401 0.72 -0.6 768,242 - MPMX19_04401 0.72 -1.1 768,242 - MPMX19_04401 0.72 -0.1 768,242 - MPMX19_04401 0.72 +0.3 768,242 - MPMX19_04401 0.72 +0.2 768,242 - MPMX19_04401 0.72 -0.2 768,242 - MPMX19_04401 0.72 -1.5 768,242 - MPMX19_04401 0.72 -0.4 768,242 - MPMX19_04401 0.72 +0.3 768,242 - MPMX19_04401 0.72 -0.3 768,242 - MPMX19_04401 0.72 -2.3 768,242 - MPMX19_04401 0.72 +0.8 768,356 + MPMX19_04401 0.80 -0.2 768,357 - MPMX19_04401 0.80 -1.6 768,357 - MPMX19_04401 0.80 +0.2 768,357 - MPMX19_04401 0.80 -0.3 768,383 + MPMX19_04401 0.81 +0.2 768,384 - MPMX19_04401 0.82 -1.2 768,455 + MPMX19_04401 0.86 -1.9 768,456 - MPMX19_04401 0.86 -0.5 768,456 - MPMX19_04401 0.86 -0.2 768,722 + -0.2 768,722 + -0.7 768,722 + +0.2 768,722 + -1.2 768,722 + -2.3 768,722 + -1.7 768,722 + +0.4 768,722 + +0.6 768,723 - -0.0 768,723 - -0.5 768,723 - +0.2 768,723 - +1.0 768,732 + +0.5 768,733 - -0.7 768,733 - -0.6 768,850 + +0.8 768,850 + +0.8 768,851 - +1.0 768,946 + MPMX19_04402 0.15 -2.4 768,946 + MPMX19_04402 0.15 -1.4 768,946 + MPMX19_04402 0.15 -0.9 768,946 + MPMX19_04402 0.15 -0.4 768,947 - MPMX19_04402 0.15 -0.5 768,947 - MPMX19_04402 0.15 -1.2 768,947 - MPMX19_04402 0.15 -0.1 768,947 - MPMX19_04402 0.15 +1.1 768,947 - MPMX19_04402 0.15 +0.4 768,967 + MPMX19_04402 0.18 -2.8 768,967 + MPMX19_04402 0.18 -0.9 768,967 + MPMX19_04402 0.18 -0.1 768,967 + MPMX19_04402 0.18 -1.7 768,967 + MPMX19_04402 0.18 -0.9 768,968 - MPMX19_04402 0.18 -0.9 768,968 - MPMX19_04402 0.18 +0.2 769,120 + MPMX19_04402 0.40 -0.6 769,120 + MPMX19_04402 0.40 -1.8 769,120 + MPMX19_04402 0.40 -1.4 769,120 + MPMX19_04402 0.40 -1.8 769,120 + MPMX19_04402 0.40 +1.0 769,120 + MPMX19_04402 0.40 -1.8 769,120 + MPMX19_04402 0.40 -0.9 769,120 + MPMX19_04402 0.40 +0.9 769,120 + MPMX19_04402 0.40 -0.6 769,120 + MPMX19_04402 0.40 -0.6 769,120 + MPMX19_04402 0.40 -0.9 769,120 + MPMX19_04402 0.40 -1.9 769,121 - MPMX19_04402 0.40 -1.4 769,121 - MPMX19_04402 0.40 -2.5 769,121 - MPMX19_04402 0.40 -1.2 769,121 - MPMX19_04402 0.40 +0.8 769,121 - MPMX19_04402 0.40 -0.4 769,121 - MPMX19_04402 0.40 -0.2 769,121 - MPMX19_04402 0.40 +1.4 769,121 - MPMX19_04402 0.40 -0.1 769,147 + MPMX19_04402 0.44 +0.8 769,147 + MPMX19_04402 0.44 -0.9 769,147 + MPMX19_04402 0.44 -0.7 769,147 + MPMX19_04402 0.44 -0.6 769,147 + MPMX19_04402 0.44 -1.3 769,147 + MPMX19_04402 0.44 +0.6 769,147 + MPMX19_04402 0.44 -0.6 769,148 - MPMX19_04402 0.44 -1.8 769,148 - MPMX19_04402 0.44 -1.4 769,148 - MPMX19_04402 0.44 +0.4 769,148 - MPMX19_04402 0.44 -1.5 769,148 - MPMX19_04402 0.44 +0.1 769,148 - MPMX19_04402 0.44 +0.0 769,148 - MPMX19_04402 0.44 -0.9 769,148 - MPMX19_04402 0.44 -1.2 769,148 - MPMX19_04402 0.44 -2.2 769,148 - MPMX19_04402 0.44 -0.4 769,283 - MPMX19_04402 0.63 -0.7 769,283 - MPMX19_04402 0.63 -0.4 769,471 + +0.8 769,471 + -2.1 769,471 + -3.4 769,472 - +1.0 769,588 - -1.4 769,602 + -0.8 769,639 + +0.8 769,639 + -1.2 769,639 + -0.6 769,639 + -1.2 769,639 + -0.7 769,639 + -1.2 769,640 - -1.4 769,640 - +1.8 769,640 - +1.4 769,640 - +0.6 769,681 + -2.8 769,681 + -0.9 769,681 + -0.6 769,682 - -0.9 769,682 - +0.2 769,682 - +0.3 769,728 + -0.9 769,728 + +0.8 769,729 - -0.9 769,729 - +1.6 769,729 - +0.2 769,729 - -1.2 769,729 - -0.2 769,730 + -2.6 769,730 + -0.3 769,731 - +0.2 769,731 - -0.8 769,919 + MPMX19_04403 0.51 +0.5 769,919 + MPMX19_04403 0.51 +0.3 769,919 + MPMX19_04403 0.51 +0.8 769,919 + MPMX19_04403 0.51 -0.4 769,919 + MPMX19_04403 0.51 -0.6 769,919 + MPMX19_04403 0.51 -0.2 769,919 + MPMX19_04403 0.51 +0.9 769,919 + MPMX19_04403 0.51 +0.2 769,919 + MPMX19_04403 0.51 -2.0 769,920 - MPMX19_04403 0.51 +0.3 769,920 - MPMX19_04403 0.51 +0.6 769,924 + MPMX19_04403 0.52 -1.1 769,924 + MPMX19_04403 0.52 -0.5 769,925 - MPMX19_04403 0.53 -1.1 769,925 - MPMX19_04403 0.53 -1.2 769,983 - MPMX19_04403 0.67 -0.6 770,012 + MPMX19_04403 0.74 -0.9 770,036 + MPMX19_04403 0.80 -0.4 770,036 + MPMX19_04403 0.80 -1.2 770,036 + MPMX19_04403 0.80 -0.6 770,037 - MPMX19_04403 0.80 -2.5 770,037 - MPMX19_04403 0.80 +0.5 770,037 - MPMX19_04403 0.80 +1.3 770,037 - MPMX19_04403 0.80 -0.7 770,130 - -1.1 770,189 - -1.9 770,295 - +0.4 770,295 - -1.3 770,295 - +0.0 770,295 - +0.1 770,295 - -0.7 770,295 - +0.2 770,324 + -0.2 770,325 - -0.8 770,325 - +0.3 770,325 - -1.2 770,325 - +0.4 770,325 - +0.5 770,325 - -0.2 770,325 - +0.2 770,325 - +1.3 770,327 - -0.1 770,327 - +0.2 770,327 - -0.4 770,327 - -1.6 770,327 - -0.7 770,396 + -1.1 770,487 - +1.1
Or see this region's nucleotide sequence