Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04252 and MPMX19_04253 are separated by 274 nucleotides MPMX19_04253 and MPMX19_04254 are separated by 238 nucleotides
MPMX19_04252: MPMX19_04252 - C4-dicarboxylate transport sensor protein DctB, at 605,112 to 606,962
_04252
MPMX19_04253: MPMX19_04253 - Aerobic C4-dicarboxylate transport protein, at 607,237 to 608,568
_04253
MPMX19_04254: MPMX19_04254 - NADP-dependent malic enzyme, at 608,807 to 611,119
_04254
Position (kb) 607
608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 606.343 kb on + strand, within MPMX19_04252 at 606.397 kb on + strand, within MPMX19_04252 at 606.397 kb on + strand, within MPMX19_04252 at 606.397 kb on + strand, within MPMX19_04252 at 606.397 kb on + strand, within MPMX19_04252 at 606.397 kb on + strand, within MPMX19_04252 at 606.397 kb on + strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.398 kb on - strand, within MPMX19_04252 at 606.472 kb on + strand, within MPMX19_04252 at 606.482 kb on - strand, within MPMX19_04252 at 606.562 kb on + strand, within MPMX19_04252 at 606.562 kb on + strand, within MPMX19_04252 at 606.562 kb on + strand, within MPMX19_04252 at 606.562 kb on + strand, within MPMX19_04252 at 606.563 kb on - strand, within MPMX19_04252 at 606.563 kb on - strand, within MPMX19_04252 at 606.563 kb on - strand, within MPMX19_04252 at 606.563 kb on - strand, within MPMX19_04252 at 606.563 kb on - strand, within MPMX19_04252 at 606.563 kb on - strand, within MPMX19_04252 at 606.563 kb on - strand, within MPMX19_04252 at 606.563 kb on - strand, within MPMX19_04252 at 606.730 kb on + strand, within MPMX19_04252 at 606.730 kb on + strand, within MPMX19_04252 at 606.730 kb on + strand, within MPMX19_04252 at 606.730 kb on + strand, within MPMX19_04252 at 606.730 kb on + strand, within MPMX19_04252 at 606.730 kb on + strand, within MPMX19_04252 at 606.731 kb on - strand, within MPMX19_04252 at 606.731 kb on - strand, within MPMX19_04252 at 606.731 kb on - strand, within MPMX19_04252 at 606.731 kb on - strand, within MPMX19_04252 at 606.731 kb on - strand, within MPMX19_04252 at 606.731 kb on - strand, within MPMX19_04252 at 606.957 kb on - strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.304 kb on - strand at 607.366 kb on + strand at 607.366 kb on + strand at 607.366 kb on + strand at 607.366 kb on + strand at 607.366 kb on + strand at 607.366 kb on + strand at 607.366 kb on + strand at 607.367 kb on - strand at 607.367 kb on - strand at 607.367 kb on - strand at 607.367 kb on - strand at 607.367 kb on - strand at 607.367 kb on - strand at 607.367 kb on - strand at 607.525 kb on + strand, within MPMX19_04253 at 607.525 kb on + strand, within MPMX19_04253 at 607.525 kb on + strand, within MPMX19_04253 at 607.525 kb on + strand, within MPMX19_04253 at 607.525 kb on + strand, within MPMX19_04253 at 607.526 kb on - strand, within MPMX19_04253 at 607.526 kb on - strand, within MPMX19_04253 at 607.526 kb on - strand, within MPMX19_04253 at 607.526 kb on - strand, within MPMX19_04253 at 607.526 kb on - strand, within MPMX19_04253 at 607.645 kb on + strand, within MPMX19_04253 at 607.645 kb on + strand, within MPMX19_04253 at 607.645 kb on + strand, within MPMX19_04253 at 607.645 kb on + strand, within MPMX19_04253 at 607.645 kb on + strand, within MPMX19_04253 at 607.646 kb on - strand, within MPMX19_04253 at 607.646 kb on - strand, within MPMX19_04253 at 607.646 kb on - strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.918 kb on + strand, within MPMX19_04253 at 607.919 kb on - strand, within MPMX19_04253 at 607.919 kb on - strand, within MPMX19_04253 at 607.919 kb on - strand, within MPMX19_04253 at 607.919 kb on - strand, within MPMX19_04253 at 607.919 kb on - strand, within MPMX19_04253 at 607.919 kb on - strand, within MPMX19_04253 at 607.966 kb on + strand, within MPMX19_04253 at 607.966 kb on + strand, within MPMX19_04253 at 607.966 kb on + strand, within MPMX19_04253 at 607.966 kb on + strand, within MPMX19_04253 at 607.966 kb on + strand, within MPMX19_04253 at 607.967 kb on - strand, within MPMX19_04253 at 607.967 kb on - strand, within MPMX19_04253 at 607.967 kb on - strand, within MPMX19_04253 at 607.967 kb on - strand, within MPMX19_04253 at 607.967 kb on - strand, within MPMX19_04253 at 607.967 kb on - strand, within MPMX19_04253 at 608.020 kb on + strand, within MPMX19_04253 at 608.020 kb on + strand, within MPMX19_04253 at 608.020 kb on + strand, within MPMX19_04253 at 608.020 kb on + strand, within MPMX19_04253 at 608.020 kb on + strand, within MPMX19_04253 at 608.020 kb on + strand, within MPMX19_04253 at 608.020 kb on + strand, within MPMX19_04253 at 608.020 kb on + strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.021 kb on - strand, within MPMX19_04253 at 608.050 kb on + strand, within MPMX19_04253 at 608.050 kb on + strand, within MPMX19_04253 at 608.050 kb on + strand, within MPMX19_04253 at 608.050 kb on + strand, within MPMX19_04253 at 608.051 kb on - strand, within MPMX19_04253 at 608.051 kb on - strand, within MPMX19_04253 at 608.051 kb on - strand, within MPMX19_04253 at 608.051 kb on - strand, within MPMX19_04253 at 608.179 kb on + strand, within MPMX19_04253 at 608.179 kb on + strand, within MPMX19_04253 at 608.180 kb on - strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.209 kb on + strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.210 kb on - strand, within MPMX19_04253 at 608.278 kb on + strand, within MPMX19_04253 at 608.278 kb on + strand, within MPMX19_04253 at 608.278 kb on + strand, within MPMX19_04253 at 608.278 kb on + strand, within MPMX19_04253 at 608.278 kb on + strand, within MPMX19_04253 at 608.278 kb on + strand, within MPMX19_04253 at 608.278 kb on + strand, within MPMX19_04253 at 608.278 kb on + strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.279 kb on - strand, within MPMX19_04253 at 608.527 kb on + strand at 608.655 kb on + strand at 608.655 kb on + strand at 608.655 kb on + strand at 608.656 kb on - strand at 608.656 kb on - strand at 608.656 kb on - strand at 608.656 kb on - strand at 608.656 kb on - strand at 608.656 kb on - strand at 608.702 kb on - strand at 608.702 kb on - strand at 608.702 kb on - strand at 608.702 kb on - strand at 608.736 kb on + strand at 608.736 kb on + strand at 608.736 kb on + strand at 608.736 kb on + strand at 608.736 kb on + strand at 608.736 kb on + strand at 608.736 kb on + strand at 608.736 kb on + strand at 608.736 kb on + strand at 608.737 kb on - strand at 608.737 kb on - strand at 608.738 kb on + strand at 608.864 kb on - strand at 608.921 kb on + strand at 608.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 606,343 + MPMX19_04252 0.67 +0.8 606,397 + MPMX19_04252 0.69 -0.3 606,397 + MPMX19_04252 0.69 -0.6 606,397 + MPMX19_04252 0.69 -0.8 606,397 + MPMX19_04252 0.69 -1.3 606,397 + MPMX19_04252 0.69 -0.2 606,397 + MPMX19_04252 0.69 -0.3 606,398 - MPMX19_04252 0.69 -0.1 606,398 - MPMX19_04252 0.69 +0.4 606,398 - MPMX19_04252 0.69 -2.2 606,398 - MPMX19_04252 0.69 +0.6 606,398 - MPMX19_04252 0.69 -0.8 606,398 - MPMX19_04252 0.69 -0.4 606,398 - MPMX19_04252 0.69 -0.7 606,398 - MPMX19_04252 0.69 -2.7 606,398 - MPMX19_04252 0.69 -0.6 606,472 + MPMX19_04252 0.73 -0.3 606,482 - MPMX19_04252 0.74 -0.7 606,562 + MPMX19_04252 0.78 +1.2 606,562 + MPMX19_04252 0.78 -1.0 606,562 + MPMX19_04252 0.78 -0.2 606,562 + MPMX19_04252 0.78 -1.0 606,563 - MPMX19_04252 0.78 +0.4 606,563 - MPMX19_04252 0.78 -0.5 606,563 - MPMX19_04252 0.78 +0.7 606,563 - MPMX19_04252 0.78 -0.0 606,563 - MPMX19_04252 0.78 -0.8 606,563 - MPMX19_04252 0.78 -0.5 606,563 - MPMX19_04252 0.78 -0.6 606,563 - MPMX19_04252 0.78 +0.7 606,730 + MPMX19_04252 0.87 +0.5 606,730 + MPMX19_04252 0.87 -0.7 606,730 + MPMX19_04252 0.87 +0.7 606,730 + MPMX19_04252 0.87 -1.5 606,730 + MPMX19_04252 0.87 +0.3 606,730 + MPMX19_04252 0.87 -0.4 606,731 - MPMX19_04252 0.87 -1.3 606,731 - MPMX19_04252 0.87 +0.4 606,731 - MPMX19_04252 0.87 -0.1 606,731 - MPMX19_04252 0.87 -0.1 606,731 - MPMX19_04252 0.87 -0.6 606,731 - MPMX19_04252 0.87 +0.4 606,957 - +0.7 607,303 + -0.3 607,303 + +0.0 607,303 + -1.2 607,303 + -0.2 607,303 + -0.9 607,303 + +0.5 607,303 + -0.3 607,303 + -1.4 607,303 + -1.3 607,303 + -1.6 607,303 + -0.7 607,303 + -1.6 607,303 + -1.3 607,304 - +0.6 607,304 - -0.4 607,304 - +1.7 607,304 - -0.3 607,304 - -0.2 607,304 - +0.0 607,304 - +0.2 607,304 - -0.7 607,304 - -1.4 607,304 - -0.7 607,304 - -1.3 607,366 + +0.1 607,366 + -0.1 607,366 + +0.1 607,366 + -1.8 607,366 + -1.7 607,366 + +0.2 607,366 + +1.3 607,367 - +0.4 607,367 - -1.3 607,367 - -0.6 607,367 - -1.7 607,367 - -0.3 607,367 - +1.7 607,367 - +0.9 607,525 + MPMX19_04253 0.22 -0.4 607,525 + MPMX19_04253 0.22 +1.2 607,525 + MPMX19_04253 0.22 -0.5 607,525 + MPMX19_04253 0.22 -0.7 607,525 + MPMX19_04253 0.22 -1.7 607,526 - MPMX19_04253 0.22 +0.6 607,526 - MPMX19_04253 0.22 -0.3 607,526 - MPMX19_04253 0.22 +1.1 607,526 - MPMX19_04253 0.22 +1.2 607,526 - MPMX19_04253 0.22 -0.8 607,645 + MPMX19_04253 0.31 +1.3 607,645 + MPMX19_04253 0.31 +0.2 607,645 + MPMX19_04253 0.31 +0.4 607,645 + MPMX19_04253 0.31 -1.7 607,645 + MPMX19_04253 0.31 -1.0 607,646 - MPMX19_04253 0.31 -2.9 607,646 - MPMX19_04253 0.31 -0.3 607,646 - MPMX19_04253 0.31 +0.5 607,918 + MPMX19_04253 0.51 -0.6 607,918 + MPMX19_04253 0.51 +2.2 607,918 + MPMX19_04253 0.51 +0.2 607,918 + MPMX19_04253 0.51 -0.3 607,918 + MPMX19_04253 0.51 +0.3 607,918 + MPMX19_04253 0.51 -0.3 607,918 + MPMX19_04253 0.51 +1.0 607,918 + MPMX19_04253 0.51 -0.0 607,918 + MPMX19_04253 0.51 -1.6 607,918 + MPMX19_04253 0.51 +1.2 607,918 + MPMX19_04253 0.51 -1.4 607,919 - MPMX19_04253 0.51 -0.8 607,919 - MPMX19_04253 0.51 -0.8 607,919 - MPMX19_04253 0.51 -1.0 607,919 - MPMX19_04253 0.51 +1.0 607,919 - MPMX19_04253 0.51 -1.3 607,919 - MPMX19_04253 0.51 +1.2 607,966 + MPMX19_04253 0.55 +0.7 607,966 + MPMX19_04253 0.55 -0.5 607,966 + MPMX19_04253 0.55 -0.8 607,966 + MPMX19_04253 0.55 -0.1 607,966 + MPMX19_04253 0.55 +0.7 607,967 - MPMX19_04253 0.55 -2.0 607,967 - MPMX19_04253 0.55 -1.3 607,967 - MPMX19_04253 0.55 -0.1 607,967 - MPMX19_04253 0.55 -0.6 607,967 - MPMX19_04253 0.55 +0.4 607,967 - MPMX19_04253 0.55 -0.6 608,020 + MPMX19_04253 0.59 +0.5 608,020 + MPMX19_04253 0.59 +0.5 608,020 + MPMX19_04253 0.59 +0.4 608,020 + MPMX19_04253 0.59 -0.6 608,020 + MPMX19_04253 0.59 +0.2 608,020 + MPMX19_04253 0.59 +1.0 608,020 + MPMX19_04253 0.59 +0.7 608,020 + MPMX19_04253 0.59 -1.3 608,021 - MPMX19_04253 0.59 -0.4 608,021 - MPMX19_04253 0.59 -0.1 608,021 - MPMX19_04253 0.59 -0.3 608,021 - MPMX19_04253 0.59 -0.3 608,021 - MPMX19_04253 0.59 -0.6 608,021 - MPMX19_04253 0.59 -1.1 608,021 - MPMX19_04253 0.59 +0.7 608,021 - MPMX19_04253 0.59 -1.4 608,021 - MPMX19_04253 0.59 +0.4 608,050 + MPMX19_04253 0.61 +1.0 608,050 + MPMX19_04253 0.61 -0.5 608,050 + MPMX19_04253 0.61 +1.3 608,050 + MPMX19_04253 0.61 -2.3 608,051 - MPMX19_04253 0.61 +1.5 608,051 - MPMX19_04253 0.61 -0.3 608,051 - MPMX19_04253 0.61 -0.6 608,051 - MPMX19_04253 0.61 -0.6 608,179 + MPMX19_04253 0.71 +0.0 608,179 + MPMX19_04253 0.71 -1.1 608,180 - MPMX19_04253 0.71 -0.3 608,209 + MPMX19_04253 0.73 -1.0 608,209 + MPMX19_04253 0.73 -0.7 608,209 + MPMX19_04253 0.73 -0.2 608,209 + MPMX19_04253 0.73 -0.5 608,209 + MPMX19_04253 0.73 +0.2 608,209 + MPMX19_04253 0.73 +0.1 608,209 + MPMX19_04253 0.73 -0.1 608,209 + MPMX19_04253 0.73 -1.1 608,209 + MPMX19_04253 0.73 -2.1 608,209 + MPMX19_04253 0.73 -2.2 608,210 - MPMX19_04253 0.73 +1.2 608,210 - MPMX19_04253 0.73 -1.1 608,210 - MPMX19_04253 0.73 -1.3 608,210 - MPMX19_04253 0.73 +0.2 608,210 - MPMX19_04253 0.73 +0.3 608,210 - MPMX19_04253 0.73 -0.4 608,210 - MPMX19_04253 0.73 +0.0 608,210 - MPMX19_04253 0.73 -0.8 608,210 - MPMX19_04253 0.73 +1.2 608,278 + MPMX19_04253 0.78 -1.0 608,278 + MPMX19_04253 0.78 +0.5 608,278 + MPMX19_04253 0.78 -0.2 608,278 + MPMX19_04253 0.78 -2.2 608,278 + MPMX19_04253 0.78 -1.1 608,278 + MPMX19_04253 0.78 +0.2 608,278 + MPMX19_04253 0.78 +0.1 608,278 + MPMX19_04253 0.78 +0.9 608,279 - MPMX19_04253 0.78 -1.8 608,279 - MPMX19_04253 0.78 -1.6 608,279 - MPMX19_04253 0.78 +0.2 608,279 - MPMX19_04253 0.78 -0.4 608,279 - MPMX19_04253 0.78 -1.1 608,279 - MPMX19_04253 0.78 +0.0 608,279 - MPMX19_04253 0.78 +0.0 608,279 - MPMX19_04253 0.78 -1.3 608,279 - MPMX19_04253 0.78 -0.8 608,279 - MPMX19_04253 0.78 +0.0 608,527 + -1.0 608,655 + +0.1 608,655 + +1.2 608,655 + +0.3 608,656 - -0.2 608,656 - +0.2 608,656 - -1.3 608,656 - -1.7 608,656 - -1.6 608,656 - +1.1 608,702 - -1.0 608,702 - -0.1 608,702 - +0.0 608,702 - -0.1 608,736 + -0.3 608,736 + -0.1 608,736 + +0.0 608,736 + -0.1 608,736 + -1.2 608,736 + +0.3 608,736 + +0.4 608,736 + -0.8 608,736 + +0.5 608,737 - +1.7 608,737 - -0.3 608,738 + -1.3 608,864 - -0.4 608,921 + +0.4 608,940 - -1.7
Or see this region's nucleotide sequence