Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04112 and MPMX19_04113 overlap by 1 nucleotides MPMX19_04113 and MPMX19_04114 are separated by 48 nucleotides MPMX19_04114 and MPMX19_04115 are separated by 22 nucleotides
MPMX19_04112: MPMX19_04112 - hypothetical protein, at 418,874 to 420,349
_04112
MPMX19_04113: MPMX19_04113 - hypothetical protein, at 420,349 to 421,029
_04113
MPMX19_04114: MPMX19_04114 - hypothetical protein, at 421,078 to 422,766
_04114
MPMX19_04115: MPMX19_04115 - Sensor histidine kinase RcsC, at 422,789 to 425,038
_04115
Position (kb) 421
422
423 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 420.137 kb on + strand, within MPMX19_04112 at 420.168 kb on - strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 420.185 kb on + strand, within MPMX19_04112 at 421.048 kb on + strand at 421.048 kb on + strand at 421.227 kb on + strand at 421.540 kb on + strand, within MPMX19_04114 at 421.541 kb on - strand, within MPMX19_04114 at 421.541 kb on - strand, within MPMX19_04114 at 421.541 kb on - strand, within MPMX19_04114 at 421.694 kb on - strand, within MPMX19_04114 at 421.694 kb on - strand, within MPMX19_04114 at 421.762 kb on + strand, within MPMX19_04114 at 421.763 kb on - strand, within MPMX19_04114 at 421.763 kb on - strand, within MPMX19_04114 at 421.763 kb on - strand, within MPMX19_04114 at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.755 kb on + strand at 422.756 kb on - strand at 422.756 kb on - strand at 422.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 420,137 + MPMX19_04112 0.86 -1.7 420,168 - MPMX19_04112 0.88 -1.4 420,185 + MPMX19_04112 0.89 -3.8 420,185 + MPMX19_04112 0.89 -3.0 420,185 + MPMX19_04112 0.89 -4.0 421,048 + +0.9 421,048 + -0.9 421,227 + -2.2 421,540 + MPMX19_04114 0.27 -1.9 421,541 - MPMX19_04114 0.27 -1.8 421,541 - MPMX19_04114 0.27 -2.2 421,541 - MPMX19_04114 0.27 -2.9 421,694 - MPMX19_04114 0.36 -1.4 421,694 - MPMX19_04114 0.36 -0.9 421,762 + MPMX19_04114 0.40 -3.2 421,763 - MPMX19_04114 0.41 -1.2 421,763 - MPMX19_04114 0.41 -1.3 421,763 - MPMX19_04114 0.41 -3.0 422,755 + -1.4 422,755 + -1.3 422,755 + -0.9 422,755 + +0.5 422,755 + -1.3 422,755 + +0.1 422,755 + -0.2 422,755 + -0.3 422,756 - -1.7 422,756 - -0.6 422,756 - -1.6
Or see this region's nucleotide sequence