Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04095 and MPMX19_04096 are separated by 30 nucleotides MPMX19_04096 and MPMX19_04097 are separated by 194 nucleotides MPMX19_04097 and MPMX19_04098 are separated by 147 nucleotides
MPMX19_04095: MPMX19_04095 - hypothetical protein, at 400,820 to 401,341
_04095
MPMX19_04096: MPMX19_04096 - hypothetical protein, at 401,372 to 401,980
_04096
MPMX19_04097: MPMX19_04097 - IS5 family transposase ISAzs10, at 402,175 to 403,251
_04097
MPMX19_04098: MPMX19_04098 - Sensor histidine kinase RcsC, at 403,399 to 405,594
_04098
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2 at 401.394 kb on + strand at 401.703 kb on + strand, within MPMX19_04096 at 401.703 kb on + strand, within MPMX19_04096 at 401.704 kb on - strand, within MPMX19_04096 at 401.704 kb on - strand, within MPMX19_04096 at 401.709 kb on + strand, within MPMX19_04096 at 401.709 kb on + strand, within MPMX19_04096 at 401.710 kb on - strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.995 kb on + strand at 401.995 kb on + strand at 401.995 kb on + strand at 401.996 kb on - strand at 401.996 kb on - strand at 401.996 kb on - strand at 401.996 kb on - strand at 402.042 kb on + strand at 402.042 kb on + strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.376 kb on + strand at 403.400 kb on + strand at 403.428 kb on + strand at 403.428 kb on + strand at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.889 kb on + strand, within MPMX19_04098 at 403.890 kb on - strand, within MPMX19_04098 at 403.890 kb on - strand, within MPMX19_04098 at 403.890 kb on - strand, within MPMX19_04098 at 403.890 kb on - strand, within MPMX19_04098 at 404.057 kb on + strand, within MPMX19_04098
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 401,394 + +1.2 401,703 + MPMX19_04096 0.54 +0.2 401,703 + MPMX19_04096 0.54 +0.7 401,704 - MPMX19_04096 0.55 -0.8 401,704 - MPMX19_04096 0.55 -0.4 401,709 + MPMX19_04096 0.55 -0.8 401,709 + MPMX19_04096 0.55 -0.3 401,710 - MPMX19_04096 0.56 +0.0 401,796 + MPMX19_04096 0.70 -0.1 401,796 + MPMX19_04096 0.70 -0.3 401,796 + MPMX19_04096 0.70 -0.1 401,796 + MPMX19_04096 0.70 +0.2 401,797 - MPMX19_04096 0.70 +0.3 401,797 - MPMX19_04096 0.70 -2.2 401,797 - MPMX19_04096 0.70 +0.6 401,797 - MPMX19_04096 0.70 -0.2 401,797 - MPMX19_04096 0.70 -0.3 401,797 - MPMX19_04096 0.70 -1.1 401,874 + MPMX19_04096 0.82 -0.1 401,874 + MPMX19_04096 0.82 -0.6 401,874 + MPMX19_04096 0.82 -0.7 401,874 + MPMX19_04096 0.82 +1.1 401,874 + MPMX19_04096 0.82 -0.6 401,874 + MPMX19_04096 0.82 +1.2 401,874 + MPMX19_04096 0.82 +1.4 401,874 + MPMX19_04096 0.82 -0.8 401,874 + MPMX19_04096 0.82 -0.6 401,874 + MPMX19_04096 0.82 -0.6 401,874 + MPMX19_04096 0.82 +1.0 401,875 - MPMX19_04096 0.83 +0.2 401,875 - MPMX19_04096 0.83 +0.4 401,875 - MPMX19_04096 0.83 -1.5 401,875 - MPMX19_04096 0.83 +0.1 401,875 - MPMX19_04096 0.83 +0.5 401,875 - MPMX19_04096 0.83 -1.0 401,875 - MPMX19_04096 0.83 +0.2 401,875 - MPMX19_04096 0.83 +0.7 401,875 - MPMX19_04096 0.83 -2.3 401,875 - MPMX19_04096 0.83 +0.0 401,995 + -1.2 401,995 + -0.6 401,995 + -0.4 401,996 - +0.6 401,996 - +0.7 401,996 - -1.7 401,996 - -0.4 402,042 + +0.0 402,042 + -0.3 402,043 - -0.9 402,043 - -1.3 402,043 - -0.5 402,043 - +0.4 402,093 - -0.8 402,093 - -1.2 402,093 - +0.0 402,093 - -1.4 402,093 - -0.3 403,376 + +0.3 403,376 + -1.7 403,376 + -0.5 403,376 + -1.1 403,376 + -1.7 403,376 + -1.4 403,400 + -0.8 403,428 + +2.6 403,428 + -0.5 403,889 + MPMX19_04098 0.22 +0.5 403,889 + MPMX19_04098 0.22 -0.6 403,889 + MPMX19_04098 0.22 +1.7 403,889 + MPMX19_04098 0.22 -0.4 403,889 + MPMX19_04098 0.22 +0.7 403,889 + MPMX19_04098 0.22 -0.5 403,889 + MPMX19_04098 0.22 +0.8 403,889 + MPMX19_04098 0.22 -1.6 403,889 + MPMX19_04098 0.22 +0.1 403,890 - MPMX19_04098 0.22 -0.7 403,890 - MPMX19_04098 0.22 +0.7 403,890 - MPMX19_04098 0.22 -0.9 403,890 - MPMX19_04098 0.22 +0.7 404,057 + MPMX19_04098 0.30 -0.0
Or see this region's nucleotide sequence