Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03429

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03428 and MPMX19_03429 overlap by 4 nucleotidesMPMX19_03429 and MPMX19_03430 overlap by 4 nucleotidesMPMX19_03430 and MPMX19_03431 overlap by 4 nucleotides MPMX19_03428: MPMX19_03428 - hypothetical protein, at 819,359 to 821,287 _03428 MPMX19_03429: MPMX19_03429 - hypothetical protein, at 821,284 to 823,326 _03429 MPMX19_03430: MPMX19_03430 - hypothetical protein, at 823,323 to 823,922 _03430 MPMX19_03431: MPMX19_03431 - hypothetical protein, at 823,919 to 824,476 _03431 Position (kb) 821 822 823 824Strain fitness (log2 ratio) -2 -1 0 1 2at 820.371 kb on - strand, within MPMX19_03428at 820.803 kb on - strand, within MPMX19_03428at 820.803 kb on - strand, within MPMX19_03428at 820.803 kb on - strand, within MPMX19_03428at 820.803 kb on - strand, within MPMX19_03428at 821.298 kb on + strandat 821.298 kb on + strandat 821.298 kb on + strandat 821.299 kb on - strandat 821.299 kb on - strandat 821.692 kb on + strand, within MPMX19_03429at 821.692 kb on + strand, within MPMX19_03429at 821.692 kb on + strand, within MPMX19_03429at 821.692 kb on + strand, within MPMX19_03429at 821.692 kb on + strand, within MPMX19_03429at 821.692 kb on + strand, within MPMX19_03429at 821.692 kb on + strand, within MPMX19_03429at 821.693 kb on - strand, within MPMX19_03429at 821.693 kb on - strand, within MPMX19_03429at 821.693 kb on - strand, within MPMX19_03429at 821.693 kb on - strand, within MPMX19_03429at 821.693 kb on - strand, within MPMX19_03429at 821.693 kb on - strand, within MPMX19_03429at 821.842 kb on + strand, within MPMX19_03429at 821.842 kb on + strand, within MPMX19_03429at 821.842 kb on + strand, within MPMX19_03429at 821.869 kb on + strand, within MPMX19_03429at 821.869 kb on + strand, within MPMX19_03429at 821.869 kb on + strand, within MPMX19_03429at 821.869 kb on + strand, within MPMX19_03429at 821.870 kb on - strand, within MPMX19_03429at 821.870 kb on - strand, within MPMX19_03429at 821.870 kb on - strand, within MPMX19_03429at 821.870 kb on - strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.718 kb on + strand, within MPMX19_03429at 822.719 kb on - strand, within MPMX19_03429at 822.719 kb on - strand, within MPMX19_03429at 822.719 kb on - strand, within MPMX19_03429at 822.719 kb on - strand, within MPMX19_03429at 822.770 kb on + strand, within MPMX19_03429at 823.422 kb on + strand, within MPMX19_03430at 823.422 kb on + strand, within MPMX19_03430at 823.423 kb on - strand, within MPMX19_03430at 823.423 kb on - strand, within MPMX19_03430at 823.446 kb on + strand, within MPMX19_03430at 823.446 kb on + strand, within MPMX19_03430at 823.446 kb on + strand, within MPMX19_03430at 823.446 kb on + strand, within MPMX19_03430at 823.447 kb on - strand, within MPMX19_03430at 823.447 kb on - strand, within MPMX19_03430at 823.447 kb on - strand, within MPMX19_03430at 823.734 kb on + strand, within MPMX19_03430at 823.734 kb on + strand, within MPMX19_03430at 823.734 kb on + strand, within MPMX19_03430at 823.773 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.812 kb on + strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.813 kb on - strand, within MPMX19_03430at 823.982 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.985 kb on + strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 823.986 kb on - strand, within MPMX19_03431at 824.219 kb on + strand, within MPMX19_03431at 824.219 kb on + strand, within MPMX19_03431at 824.220 kb on - strand, within MPMX19_03431at 824.220 kb on - strand, within MPMX19_03431

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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820,371 - MPMX19_03428 0.52 -0.2
820,803 - MPMX19_03428 0.75 +0.2
820,803 - MPMX19_03428 0.75 -1.0
820,803 - MPMX19_03428 0.75 -0.9
820,803 - MPMX19_03428 0.75 -0.9
821,298 + -2.0
821,298 + +0.1
821,298 + -0.3
821,299 - -0.6
821,299 - -0.7
821,692 + MPMX19_03429 0.20 -1.3
821,692 + MPMX19_03429 0.20 -0.7
821,692 + MPMX19_03429 0.20 +0.2
821,692 + MPMX19_03429 0.20 +1.2
821,692 + MPMX19_03429 0.20 +0.2
821,692 + MPMX19_03429 0.20 -0.2
821,692 + MPMX19_03429 0.20 -0.8
821,693 - MPMX19_03429 0.20 +0.1
821,693 - MPMX19_03429 0.20 -0.4
821,693 - MPMX19_03429 0.20 +0.2
821,693 - MPMX19_03429 0.20 -0.0
821,693 - MPMX19_03429 0.20 -0.2
821,693 - MPMX19_03429 0.20 -1.0
821,842 + MPMX19_03429 0.27 +0.2
821,842 + MPMX19_03429 0.27 +0.5
821,842 + MPMX19_03429 0.27 -0.0
821,869 + MPMX19_03429 0.29 -1.9
821,869 + MPMX19_03429 0.29 -0.2
821,869 + MPMX19_03429 0.29 -1.0
821,869 + MPMX19_03429 0.29 -0.9
821,870 - MPMX19_03429 0.29 -0.3
821,870 - MPMX19_03429 0.29 -0.9
821,870 - MPMX19_03429 0.29 +0.0
821,870 - MPMX19_03429 0.29 +0.4
822,718 + MPMX19_03429 0.70 -1.3
822,718 + MPMX19_03429 0.70 -1.8
822,718 + MPMX19_03429 0.70 -1.7
822,718 + MPMX19_03429 0.70 -1.5
822,718 + MPMX19_03429 0.70 -1.7
822,718 + MPMX19_03429 0.70 -0.8
822,718 + MPMX19_03429 0.70 -0.8
822,718 + MPMX19_03429 0.70 +1.2
822,718 + MPMX19_03429 0.70 +0.0
822,719 - MPMX19_03429 0.70 -0.7
822,719 - MPMX19_03429 0.70 -1.0
822,719 - MPMX19_03429 0.70 -0.8
822,719 - MPMX19_03429 0.70 -2.6
822,770 + MPMX19_03429 0.73 +0.3
823,422 + MPMX19_03430 0.17 +0.4
823,422 + MPMX19_03430 0.17 +1.7
823,423 - MPMX19_03430 0.17 -1.2
823,423 - MPMX19_03430 0.17 +0.8
823,446 + MPMX19_03430 0.20 +0.5
823,446 + MPMX19_03430 0.20 -0.7
823,446 + MPMX19_03430 0.20 +2.0
823,446 + MPMX19_03430 0.20 -0.2
823,447 - MPMX19_03430 0.21 -1.2
823,447 - MPMX19_03430 0.21 +0.3
823,447 - MPMX19_03430 0.21 +0.5
823,734 + MPMX19_03430 0.69 -1.4
823,734 + MPMX19_03430 0.69 +0.3
823,734 + MPMX19_03430 0.69 -0.9
823,773 + MPMX19_03430 0.75 -0.1
823,812 + MPMX19_03430 0.81 -1.0
823,812 + MPMX19_03430 0.81 -0.1
823,812 + MPMX19_03430 0.81 +0.4
823,812 + MPMX19_03430 0.81 +0.2
823,812 + MPMX19_03430 0.81 -0.5
823,812 + MPMX19_03430 0.81 +0.9
823,812 + MPMX19_03430 0.81 -1.3
823,812 + MPMX19_03430 0.81 -1.2
823,812 + MPMX19_03430 0.81 +0.3
823,812 + MPMX19_03430 0.81 -0.3
823,812 + MPMX19_03430 0.81 -0.7
823,812 + MPMX19_03430 0.81 -0.3
823,812 + MPMX19_03430 0.81 +1.5
823,812 + MPMX19_03430 0.81 -0.3
823,813 - MPMX19_03430 0.82 +0.1
823,813 - MPMX19_03430 0.82 -0.0
823,813 - MPMX19_03430 0.82 +0.2
823,813 - MPMX19_03430 0.82 -0.9
823,813 - MPMX19_03430 0.82 +1.5
823,813 - MPMX19_03430 0.82 -0.3
823,813 - MPMX19_03430 0.82 -0.3
823,813 - MPMX19_03430 0.82 -2.3
823,813 - MPMX19_03430 0.82 -0.8
823,813 - MPMX19_03430 0.82 +0.7
823,813 - MPMX19_03430 0.82 +1.2
823,813 - MPMX19_03430 0.82 -0.3
823,813 - MPMX19_03430 0.82 -0.3
823,813 - MPMX19_03430 0.82 +0.7
823,813 - MPMX19_03430 0.82 -2.3
823,813 - MPMX19_03430 0.82 -0.2
823,813 - MPMX19_03430 0.82 -1.0
823,813 - MPMX19_03430 0.82 -0.5
823,813 - MPMX19_03430 0.82 -1.0
823,813 - MPMX19_03430 0.82 +0.3
823,982 + MPMX19_03431 0.11 -0.3
823,985 + MPMX19_03431 0.12 -0.2
823,985 + MPMX19_03431 0.12 -1.5
823,985 + MPMX19_03431 0.12 -1.0
823,985 + MPMX19_03431 0.12 -1.7
823,985 + MPMX19_03431 0.12 -0.4
823,985 + MPMX19_03431 0.12 -0.0
823,985 + MPMX19_03431 0.12 -0.3
823,986 - MPMX19_03431 0.12 -0.3
823,986 - MPMX19_03431 0.12 +1.1
823,986 - MPMX19_03431 0.12 +1.2
823,986 - MPMX19_03431 0.12 +1.9
823,986 - MPMX19_03431 0.12 -0.9
823,986 - MPMX19_03431 0.12 -0.2
823,986 - MPMX19_03431 0.12 -1.0
823,986 - MPMX19_03431 0.12 -0.7
824,219 + MPMX19_03431 0.54 -0.9
824,219 + MPMX19_03431 0.54 -1.2
824,220 - MPMX19_03431 0.54 -0.7
824,220 - MPMX19_03431 0.54 -0.8

Or see this region's nucleotide sequence