Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03387 and MPMX19_03388 overlap by 4 nucleotides MPMX19_03388 and MPMX19_03389 overlap by 13 nucleotides MPMX19_03389 and MPMX19_03390 overlap by 8 nucleotides
MPMX19_03387: MPMX19_03387 - hypothetical protein, at 771,335 to 774,394
_03387
MPMX19_03388: MPMX19_03388 - 6-hydroxypseudooxynicotine dehydrogenase complex subunit alpha, at 774,391 to 775,227
_03388
MPMX19_03389: MPMX19_03389 - Carbon monoxide dehydrogenase small chain, at 775,215 to 775,745
_03389
MPMX19_03390: MPMX19_03390 - 4-chlorobenzoate--CoA ligase, at 775,738 to 777,309
_03390
Position (kb) 775
776 Strain fitness (log2 ratio) -2
-1
0
1
2 at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 774.412 kb on + strand at 775.269 kb on + strand, within MPMX19_03389 at 775.600 kb on - strand, within MPMX19_03389 at 775.600 kb on - strand, within MPMX19_03389 at 775.636 kb on + strand, within MPMX19_03389 at 775.636 kb on + strand, within MPMX19_03389 at 775.636 kb on + strand, within MPMX19_03389 at 775.636 kb on + strand, within MPMX19_03389 at 775.637 kb on - strand, within MPMX19_03389 at 775.637 kb on - strand, within MPMX19_03389 at 775.637 kb on - strand, within MPMX19_03389 at 775.637 kb on - strand, within MPMX19_03389 at 775.677 kb on + strand, within MPMX19_03389 at 775.825 kb on + strand at 775.826 kb on - strand at 775.826 kb on - strand at 776.014 kb on + strand, within MPMX19_03390 at 776.015 kb on - strand, within MPMX19_03390 at 776.050 kb on + strand, within MPMX19_03390 at 776.050 kb on + strand, within MPMX19_03390 at 776.050 kb on + strand, within MPMX19_03390 at 776.051 kb on - strand, within MPMX19_03390 at 776.051 kb on - strand, within MPMX19_03390 at 776.224 kb on + strand, within MPMX19_03390 at 776.224 kb on + strand, within MPMX19_03390 at 776.224 kb on + strand, within MPMX19_03390 at 776.224 kb on + strand, within MPMX19_03390 at 776.225 kb on - strand, within MPMX19_03390 at 776.225 kb on - strand, within MPMX19_03390 at 776.225 kb on - strand, within MPMX19_03390 at 776.225 kb on - strand, within MPMX19_03390 at 776.356 kb on + strand, within MPMX19_03390 at 776.357 kb on - strand, within MPMX19_03390 at 776.357 kb on - strand, within MPMX19_03390 at 776.357 kb on - strand, within MPMX19_03390 at 776.482 kb on + strand, within MPMX19_03390 at 776.482 kb on + strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.483 kb on - strand, within MPMX19_03390 at 776.500 kb on + strand, within MPMX19_03390 at 776.500 kb on + strand, within MPMX19_03390 at 776.501 kb on - strand, within MPMX19_03390 at 776.501 kb on - strand, within MPMX19_03390 at 776.501 kb on - strand, within MPMX19_03390 at 776.645 kb on - strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.662 kb on + strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390 at 776.663 kb on - strand, within MPMX19_03390
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 774,412 + -1.0 774,412 + +1.7 774,412 + -1.7 774,412 + -0.1 774,412 + -0.2 774,412 + -0.6 775,269 + MPMX19_03389 0.10 -1.1 775,600 - MPMX19_03389 0.73 -0.5 775,600 - MPMX19_03389 0.73 -1.3 775,636 + MPMX19_03389 0.79 -2.2 775,636 + MPMX19_03389 0.79 -0.0 775,636 + MPMX19_03389 0.79 -2.0 775,636 + MPMX19_03389 0.79 +0.3 775,637 - MPMX19_03389 0.79 -0.9 775,637 - MPMX19_03389 0.79 -1.7 775,637 - MPMX19_03389 0.79 +0.3 775,637 - MPMX19_03389 0.79 -1.0 775,677 + MPMX19_03389 0.87 -0.8 775,825 + +0.1 775,826 - -1.6 775,826 - +1.0 776,014 + MPMX19_03390 0.18 +0.8 776,015 - MPMX19_03390 0.18 -0.3 776,050 + MPMX19_03390 0.20 -0.8 776,050 + MPMX19_03390 0.20 +1.1 776,050 + MPMX19_03390 0.20 +0.7 776,051 - MPMX19_03390 0.20 -0.2 776,051 - MPMX19_03390 0.20 -2.3 776,224 + MPMX19_03390 0.31 +1.1 776,224 + MPMX19_03390 0.31 -0.8 776,224 + MPMX19_03390 0.31 +0.1 776,224 + MPMX19_03390 0.31 +0.5 776,225 - MPMX19_03390 0.31 +0.1 776,225 - MPMX19_03390 0.31 -0.5 776,225 - MPMX19_03390 0.31 -0.3 776,225 - MPMX19_03390 0.31 -0.2 776,356 + MPMX19_03390 0.39 -0.3 776,357 - MPMX19_03390 0.39 -0.5 776,357 - MPMX19_03390 0.39 -1.3 776,357 - MPMX19_03390 0.39 +0.8 776,482 + MPMX19_03390 0.47 -1.9 776,482 + MPMX19_03390 0.47 -1.3 776,483 - MPMX19_03390 0.47 +0.1 776,483 - MPMX19_03390 0.47 -0.5 776,483 - MPMX19_03390 0.47 -0.1 776,483 - MPMX19_03390 0.47 -1.0 776,483 - MPMX19_03390 0.47 -2.2 776,500 + MPMX19_03390 0.48 -1.2 776,500 + MPMX19_03390 0.48 -0.6 776,501 - MPMX19_03390 0.49 +0.8 776,501 - MPMX19_03390 0.49 -1.7 776,501 - MPMX19_03390 0.49 +1.4 776,645 - MPMX19_03390 0.58 -0.0 776,662 + MPMX19_03390 0.59 +0.4 776,662 + MPMX19_03390 0.59 -1.0 776,662 + MPMX19_03390 0.59 -0.2 776,662 + MPMX19_03390 0.59 -0.8 776,662 + MPMX19_03390 0.59 +0.2 776,662 + MPMX19_03390 0.59 +0.6 776,662 + MPMX19_03390 0.59 +2.1 776,662 + MPMX19_03390 0.59 -0.2 776,663 - MPMX19_03390 0.59 -0.8 776,663 - MPMX19_03390 0.59 +0.3 776,663 - MPMX19_03390 0.59 +0.1 776,663 - MPMX19_03390 0.59 -1.2 776,663 - MPMX19_03390 0.59 +0.1 776,663 - MPMX19_03390 0.59 +0.8
Or see this region's nucleotide sequence