Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03306 and MPMX19_03307 are separated by 24 nucleotides MPMX19_03307 and MPMX19_03308 are separated by 42 nucleotides MPMX19_03308 and MPMX19_03309 are separated by 4 nucleotides
MPMX19_03306: MPMX19_03306 - hypothetical protein, at 652,454 to 653,635
_03306
MPMX19_03307: MPMX19_03307 - Galactarate dehydratase (L-threo-forming), at 653,660 to 655,186
_03307
MPMX19_03308: MPMX19_03308 - hypothetical protein, at 655,229 to 656,044
_03308
MPMX19_03309: MPMX19_03309 - Pyridoxal 4-dehydrogenase, at 656,049 to 657,074
_03309
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 652.941 kb on + strand, within MPMX19_03306 at 652.942 kb on - strand, within MPMX19_03306 at 652.942 kb on - strand, within MPMX19_03306 at 652.942 kb on - strand, within MPMX19_03306 at 652.967 kb on + strand, within MPMX19_03306 at 652.968 kb on - strand, within MPMX19_03306 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.850 kb on + strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.851 kb on - strand, within MPMX19_03307 at 653.901 kb on + strand, within MPMX19_03307 at 653.901 kb on + strand, within MPMX19_03307 at 653.902 kb on - strand, within MPMX19_03307 at 653.902 kb on - strand, within MPMX19_03307 at 653.980 kb on - strand, within MPMX19_03307 at 654.030 kb on + strand, within MPMX19_03307 at 654.031 kb on - strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.168 kb on + strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.169 kb on - strand, within MPMX19_03307 at 654.255 kb on + strand, within MPMX19_03307 at 654.255 kb on + strand, within MPMX19_03307 at 654.255 kb on + strand, within MPMX19_03307 at 654.352 kb on - strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.242 kb on + strand at 655.243 kb on - strand at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.666 kb on + strand, within MPMX19_03308 at 655.667 kb on - strand, within MPMX19_03308
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 652,941 + MPMX19_03306 0.41 -1.6 652,942 - MPMX19_03306 0.41 -0.5 652,942 - MPMX19_03306 0.41 +1.3 652,942 - MPMX19_03306 0.41 -1.0 652,967 + MPMX19_03306 0.43 -0.0 652,968 - MPMX19_03306 0.43 +0.2 653,850 + MPMX19_03307 0.12 +0.1 653,850 + MPMX19_03307 0.12 -0.5 653,850 + MPMX19_03307 0.12 +1.1 653,850 + MPMX19_03307 0.12 -0.9 653,850 + MPMX19_03307 0.12 -0.3 653,850 + MPMX19_03307 0.12 +0.7 653,851 - MPMX19_03307 0.13 +0.2 653,851 - MPMX19_03307 0.13 +0.2 653,851 - MPMX19_03307 0.13 -0.9 653,851 - MPMX19_03307 0.13 -0.5 653,851 - MPMX19_03307 0.13 +0.7 653,851 - MPMX19_03307 0.13 -0.4 653,851 - MPMX19_03307 0.13 -0.0 653,901 + MPMX19_03307 0.16 +0.5 653,901 + MPMX19_03307 0.16 +0.9 653,902 - MPMX19_03307 0.16 +0.3 653,902 - MPMX19_03307 0.16 -0.1 653,980 - MPMX19_03307 0.21 +0.5 654,030 + MPMX19_03307 0.24 +0.8 654,031 - MPMX19_03307 0.24 -0.8 654,168 + MPMX19_03307 0.33 +0.1 654,168 + MPMX19_03307 0.33 +1.3 654,168 + MPMX19_03307 0.33 -1.1 654,168 + MPMX19_03307 0.33 -0.8 654,168 + MPMX19_03307 0.33 -0.8 654,168 + MPMX19_03307 0.33 +0.6 654,168 + MPMX19_03307 0.33 +0.5 654,168 + MPMX19_03307 0.33 -0.5 654,168 + MPMX19_03307 0.33 +0.3 654,169 - MPMX19_03307 0.33 -0.1 654,169 - MPMX19_03307 0.33 -0.9 654,169 - MPMX19_03307 0.33 -0.3 654,169 - MPMX19_03307 0.33 +2.4 654,169 - MPMX19_03307 0.33 -1.1 654,169 - MPMX19_03307 0.33 -0.3 654,169 - MPMX19_03307 0.33 -0.3 654,169 - MPMX19_03307 0.33 -0.3 654,169 - MPMX19_03307 0.33 -1.1 654,169 - MPMX19_03307 0.33 +0.1 654,169 - MPMX19_03307 0.33 -0.9 654,169 - MPMX19_03307 0.33 -0.8 654,169 - MPMX19_03307 0.33 +0.1 654,255 + MPMX19_03307 0.39 -0.5 654,255 + MPMX19_03307 0.39 +0.2 654,255 + MPMX19_03307 0.39 -0.5 654,352 - MPMX19_03307 0.45 -1.1 654,810 + MPMX19_03307 0.75 +0.7 654,810 + MPMX19_03307 0.75 +0.5 654,810 + MPMX19_03307 0.75 -1.0 654,810 + MPMX19_03307 0.75 +2.1 654,810 + MPMX19_03307 0.75 -0.7 654,810 + MPMX19_03307 0.75 +1.1 654,810 + MPMX19_03307 0.75 -1.5 654,810 + MPMX19_03307 0.75 -1.0 654,810 + MPMX19_03307 0.75 -0.1 654,810 + MPMX19_03307 0.75 +1.5 654,810 + MPMX19_03307 0.75 -0.7 654,810 + MPMX19_03307 0.75 +0.8 654,811 - MPMX19_03307 0.75 -0.9 654,811 - MPMX19_03307 0.75 -1.9 654,811 - MPMX19_03307 0.75 -1.8 654,811 - MPMX19_03307 0.75 -0.1 654,811 - MPMX19_03307 0.75 -1.1 654,811 - MPMX19_03307 0.75 -1.1 654,811 - MPMX19_03307 0.75 -0.9 654,811 - MPMX19_03307 0.75 +0.1 654,999 + MPMX19_03307 0.88 -0.3 654,999 + MPMX19_03307 0.88 -0.9 654,999 + MPMX19_03307 0.88 -1.0 655,000 - MPMX19_03307 0.88 -1.3 655,000 - MPMX19_03307 0.88 +0.1 655,000 - MPMX19_03307 0.88 -0.0 655,000 - MPMX19_03307 0.88 -0.8 655,000 - MPMX19_03307 0.88 -0.9 655,242 + +0.4 655,243 - +0.5 655,410 + MPMX19_03308 0.22 +0.2 655,410 + MPMX19_03308 0.22 -0.5 655,410 + MPMX19_03308 0.22 -0.1 655,410 + MPMX19_03308 0.22 +0.9 655,411 - MPMX19_03308 0.22 -0.7 655,411 - MPMX19_03308 0.22 -0.8 655,411 - MPMX19_03308 0.22 +0.3 655,411 - MPMX19_03308 0.22 -0.5 655,411 - MPMX19_03308 0.22 -0.0 655,411 - MPMX19_03308 0.22 +0.3 655,666 + MPMX19_03308 0.54 +0.4 655,667 - MPMX19_03308 0.54 -1.3
Or see this region's nucleotide sequence