Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03211 and MPMX19_03212 are separated by 28 nucleotides MPMX19_03212 and MPMX19_03213 are separated by 93 nucleotides MPMX19_03213 and MPMX19_03214 are separated by 18 nucleotides
MPMX19_03211: MPMX19_03211 - hypothetical protein, at 510,340 to 511,605
_03211
MPMX19_03212: MPMX19_03212 - hypothetical protein, at 511,634 to 512,077
_03212
MPMX19_03213: MPMX19_03213 - hypothetical protein, at 512,171 to 512,656
_03213
MPMX19_03214: MPMX19_03214 - hypothetical protein, at 512,675 to 514,129
_03214
Position (kb) 512
513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 511.205 kb on - strand, within MPMX19_03211 at 511.246 kb on + strand, within MPMX19_03211 at 511.247 kb on - strand, within MPMX19_03211 at 511.247 kb on - strand, within MPMX19_03211 at 511.334 kb on - strand, within MPMX19_03211 at 511.334 kb on - strand, within MPMX19_03211 at 511.334 kb on - strand, within MPMX19_03211 at 511.334 kb on - strand, within MPMX19_03211 at 511.334 kb on - strand, within MPMX19_03211 at 511.334 kb on - strand, within MPMX19_03211 at 511.334 kb on - strand, within MPMX19_03211 at 511.372 kb on + strand, within MPMX19_03211 at 511.372 kb on + strand, within MPMX19_03211 at 511.372 kb on + strand, within MPMX19_03211 at 511.373 kb on - strand, within MPMX19_03211 at 511.373 kb on - strand, within MPMX19_03211 at 511.459 kb on + strand, within MPMX19_03211 at 511.507 kb on + strand at 511.508 kb on - strand at 511.620 kb on - strand at 511.622 kb on - strand at 511.622 kb on - strand at 511.794 kb on - strand, within MPMX19_03212 at 511.813 kb on + strand, within MPMX19_03212 at 511.813 kb on + strand, within MPMX19_03212 at 511.813 kb on + strand, within MPMX19_03212 at 511.813 kb on + strand, within MPMX19_03212 at 511.813 kb on + strand, within MPMX19_03212 at 511.814 kb on - strand, within MPMX19_03212 at 512.003 kb on + strand, within MPMX19_03212 at 512.003 kb on + strand, within MPMX19_03212 at 512.003 kb on + strand, within MPMX19_03212 at 512.004 kb on - strand, within MPMX19_03212 at 512.004 kb on - strand, within MPMX19_03212 at 512.324 kb on + strand, within MPMX19_03213 at 512.324 kb on + strand, within MPMX19_03213 at 512.324 kb on + strand, within MPMX19_03213 at 512.325 kb on - strand, within MPMX19_03213 at 512.393 kb on - strand, within MPMX19_03213 at 512.468 kb on + strand, within MPMX19_03213 at 512.468 kb on + strand, within MPMX19_03213 at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.718 kb on + strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.719 kb on - strand at 512.804 kb on + strand at 512.804 kb on + strand at 512.805 kb on - strand at 512.805 kb on - strand at 512.805 kb on - strand at 512.805 kb on - strand at 512.805 kb on - strand at 512.915 kb on + strand, within MPMX19_03214 at 512.915 kb on + strand, within MPMX19_03214 at 512.915 kb on + strand, within MPMX19_03214 at 512.916 kb on - strand, within MPMX19_03214 at 512.916 kb on - strand, within MPMX19_03214 at 512.916 kb on - strand, within MPMX19_03214 at 512.916 kb on - strand, within MPMX19_03214 at 512.928 kb on + strand, within MPMX19_03214 at 512.928 kb on + strand, within MPMX19_03214 at 512.928 kb on + strand, within MPMX19_03214 at 512.928 kb on + strand, within MPMX19_03214 at 512.928 kb on + strand, within MPMX19_03214 at 512.928 kb on + strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 512.929 kb on - strand, within MPMX19_03214 at 513.025 kb on + strand, within MPMX19_03214 at 513.025 kb on + strand, within MPMX19_03214 at 513.026 kb on - strand, within MPMX19_03214 at 513.026 kb on - strand, within MPMX19_03214 at 513.026 kb on - strand, within MPMX19_03214 at 513.026 kb on - strand, within MPMX19_03214 at 513.026 kb on - strand, within MPMX19_03214 at 513.026 kb on - strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.044 kb on + strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.045 kb on - strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.122 kb on + strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.123 kb on - strand, within MPMX19_03214 at 513.169 kb on + strand, within MPMX19_03214 at 513.169 kb on + strand, within MPMX19_03214 at 513.169 kb on + strand, within MPMX19_03214 at 513.169 kb on + strand, within MPMX19_03214 at 513.169 kb on + strand, within MPMX19_03214 at 513.169 kb on + strand, within MPMX19_03214 at 513.170 kb on - strand, within MPMX19_03214 at 513.170 kb on - strand, within MPMX19_03214 at 513.170 kb on - strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.224 kb on + strand, within MPMX19_03214 at 513.225 kb on - strand, within MPMX19_03214 at 513.225 kb on - strand, within MPMX19_03214 at 513.225 kb on - strand, within MPMX19_03214 at 513.225 kb on - strand, within MPMX19_03214 at 513.225 kb on - strand, within MPMX19_03214 at 513.225 kb on - strand, within MPMX19_03214 at 513.225 kb on - strand, within MPMX19_03214 at 513.226 kb on + strand, within MPMX19_03214 at 513.226 kb on + strand, within MPMX19_03214 at 513.226 kb on + strand, within MPMX19_03214 at 513.226 kb on + strand, within MPMX19_03214 at 513.226 kb on + strand, within MPMX19_03214 at 513.226 kb on + strand, within MPMX19_03214 at 513.226 kb on + strand, within MPMX19_03214 at 513.226 kb on + strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.227 kb on - strand, within MPMX19_03214 at 513.516 kb on + strand, within MPMX19_03214 at 513.516 kb on + strand, within MPMX19_03214 at 513.516 kb on + strand, within MPMX19_03214 at 513.516 kb on + strand, within MPMX19_03214 at 513.516 kb on + strand, within MPMX19_03214 at 513.516 kb on + strand, within MPMX19_03214 at 513.516 kb on + strand, within MPMX19_03214 at 513.516 kb on + strand, within MPMX19_03214 at 513.517 kb on - strand, within MPMX19_03214 at 513.517 kb on - strand, within MPMX19_03214 at 513.517 kb on - strand, within MPMX19_03214 at 513.517 kb on - strand, within MPMX19_03214 at 513.517 kb on - strand, within MPMX19_03214 at 513.517 kb on - strand, within MPMX19_03214 at 513.517 kb on - strand, within MPMX19_03214 at 513.517 kb on - strand, within MPMX19_03214 at 513.614 kb on + strand, within MPMX19_03214 at 513.614 kb on + strand, within MPMX19_03214 at 513.614 kb on + strand, within MPMX19_03214 at 513.614 kb on + strand, within MPMX19_03214 at 513.614 kb on + strand, within MPMX19_03214 at 513.614 kb on + strand, within MPMX19_03214 at 513.614 kb on + strand, within MPMX19_03214 at 513.615 kb on - strand, within MPMX19_03214 at 513.615 kb on - strand, within MPMX19_03214 at 513.615 kb on - strand, within MPMX19_03214 at 513.615 kb on - strand, within MPMX19_03214 at 513.615 kb on - strand, within MPMX19_03214
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 511,205 - MPMX19_03211 0.68 -2.3 511,246 + MPMX19_03211 0.72 -0.9 511,247 - MPMX19_03211 0.72 -1.3 511,247 - MPMX19_03211 0.72 -1.5 511,334 - MPMX19_03211 0.79 -2.9 511,334 - MPMX19_03211 0.79 -1.3 511,334 - MPMX19_03211 0.79 +1.0 511,334 - MPMX19_03211 0.79 +0.1 511,334 - MPMX19_03211 0.79 +1.5 511,334 - MPMX19_03211 0.79 -1.2 511,334 - MPMX19_03211 0.79 -0.3 511,372 + MPMX19_03211 0.82 -0.2 511,372 + MPMX19_03211 0.82 -0.8 511,372 + MPMX19_03211 0.82 -1.4 511,373 - MPMX19_03211 0.82 +0.3 511,373 - MPMX19_03211 0.82 +1.3 511,459 + MPMX19_03211 0.88 -0.4 511,507 + -1.3 511,508 - +0.2 511,620 - +0.2 511,622 - -0.3 511,622 - -1.8 511,794 - MPMX19_03212 0.36 +0.4 511,813 + MPMX19_03212 0.40 +0.9 511,813 + MPMX19_03212 0.40 +0.5 511,813 + MPMX19_03212 0.40 +1.1 511,813 + MPMX19_03212 0.40 +0.4 511,813 + MPMX19_03212 0.40 +0.2 511,814 - MPMX19_03212 0.41 -1.5 512,003 + MPMX19_03212 0.83 -0.2 512,003 + MPMX19_03212 0.83 +0.5 512,003 + MPMX19_03212 0.83 -1.2 512,004 - MPMX19_03212 0.83 +0.1 512,004 - MPMX19_03212 0.83 +0.2 512,324 + MPMX19_03213 0.31 -1.7 512,324 + MPMX19_03213 0.31 -0.6 512,324 + MPMX19_03213 0.31 -1.9 512,325 - MPMX19_03213 0.32 +1.4 512,393 - MPMX19_03213 0.46 -0.4 512,468 + MPMX19_03213 0.61 -0.3 512,468 + MPMX19_03213 0.61 -1.1 512,718 + -0.9 512,718 + +1.2 512,718 + -1.4 512,718 + +0.7 512,718 + -0.2 512,718 + +0.6 512,718 + -0.7 512,718 + -0.5 512,718 + +0.6 512,718 + -0.3 512,718 + -1.4 512,718 + -0.8 512,718 + -0.6 512,719 - -0.3 512,719 - -0.1 512,719 - -0.1 512,719 - -1.8 512,719 - -1.2 512,719 - +1.1 512,719 - +0.5 512,719 - -0.6 512,719 - -0.1 512,719 - +0.1 512,719 - -0.1 512,719 - -1.0 512,719 - +0.2 512,719 - +2.3 512,719 - +0.7 512,719 - +0.4 512,719 - -1.0 512,804 + -0.3 512,804 + -0.9 512,805 - -0.5 512,805 - +1.4 512,805 - -0.1 512,805 - +0.3 512,805 - -1.1 512,915 + MPMX19_03214 0.16 -0.2 512,915 + MPMX19_03214 0.16 -1.8 512,915 + MPMX19_03214 0.16 -0.8 512,916 - MPMX19_03214 0.17 -0.7 512,916 - MPMX19_03214 0.17 -1.5 512,916 - MPMX19_03214 0.17 -0.1 512,916 - MPMX19_03214 0.17 +0.9 512,928 + MPMX19_03214 0.17 -0.6 512,928 + MPMX19_03214 0.17 -0.2 512,928 + MPMX19_03214 0.17 +0.0 512,928 + MPMX19_03214 0.17 +0.2 512,928 + MPMX19_03214 0.17 +0.4 512,928 + MPMX19_03214 0.17 -0.0 512,929 - MPMX19_03214 0.17 -2.5 512,929 - MPMX19_03214 0.17 -1.1 512,929 - MPMX19_03214 0.17 -0.9 512,929 - MPMX19_03214 0.17 -1.5 512,929 - MPMX19_03214 0.17 +0.5 512,929 - MPMX19_03214 0.17 +0.7 512,929 - MPMX19_03214 0.17 +0.9 512,929 - MPMX19_03214 0.17 +0.9 512,929 - MPMX19_03214 0.17 +0.7 512,929 - MPMX19_03214 0.17 -0.0 513,025 + MPMX19_03214 0.24 -0.4 513,025 + MPMX19_03214 0.24 -0.3 513,026 - MPMX19_03214 0.24 -1.6 513,026 - MPMX19_03214 0.24 -1.3 513,026 - MPMX19_03214 0.24 -1.9 513,026 - MPMX19_03214 0.24 -1.5 513,026 - MPMX19_03214 0.24 -1.1 513,026 - MPMX19_03214 0.24 -0.6 513,044 + MPMX19_03214 0.25 -0.9 513,044 + MPMX19_03214 0.25 +0.1 513,044 + MPMX19_03214 0.25 -0.6 513,044 + MPMX19_03214 0.25 +0.1 513,044 + MPMX19_03214 0.25 -0.2 513,044 + MPMX19_03214 0.25 +1.2 513,044 + MPMX19_03214 0.25 -0.3 513,044 + MPMX19_03214 0.25 -1.0 513,044 + MPMX19_03214 0.25 -0.6 513,045 - MPMX19_03214 0.25 -0.6 513,045 - MPMX19_03214 0.25 +0.1 513,045 - MPMX19_03214 0.25 -0.2 513,045 - MPMX19_03214 0.25 -1.9 513,045 - MPMX19_03214 0.25 -0.7 513,045 - MPMX19_03214 0.25 +1.0 513,045 - MPMX19_03214 0.25 +1.0 513,045 - MPMX19_03214 0.25 -1.4 513,045 - MPMX19_03214 0.25 +0.3 513,045 - MPMX19_03214 0.25 +0.9 513,045 - MPMX19_03214 0.25 -1.4 513,122 + MPMX19_03214 0.31 -0.6 513,122 + MPMX19_03214 0.31 -0.6 513,122 + MPMX19_03214 0.31 +0.7 513,122 + MPMX19_03214 0.31 +0.1 513,122 + MPMX19_03214 0.31 -0.7 513,122 + MPMX19_03214 0.31 +0.8 513,122 + MPMX19_03214 0.31 -0.6 513,122 + MPMX19_03214 0.31 -0.5 513,122 + MPMX19_03214 0.31 -0.6 513,122 + MPMX19_03214 0.31 -0.6 513,122 + MPMX19_03214 0.31 +0.1 513,123 - MPMX19_03214 0.31 -0.3 513,123 - MPMX19_03214 0.31 +0.1 513,123 - MPMX19_03214 0.31 +0.2 513,123 - MPMX19_03214 0.31 -0.4 513,123 - MPMX19_03214 0.31 -1.0 513,123 - MPMX19_03214 0.31 +0.1 513,123 - MPMX19_03214 0.31 +0.1 513,123 - MPMX19_03214 0.31 -0.9 513,123 - MPMX19_03214 0.31 +0.9 513,123 - MPMX19_03214 0.31 -1.3 513,123 - MPMX19_03214 0.31 -1.2 513,123 - MPMX19_03214 0.31 -1.5 513,123 - MPMX19_03214 0.31 +1.7 513,169 + MPMX19_03214 0.34 -0.4 513,169 + MPMX19_03214 0.34 +1.7 513,169 + MPMX19_03214 0.34 +1.1 513,169 + MPMX19_03214 0.34 +0.7 513,169 + MPMX19_03214 0.34 -0.3 513,169 + MPMX19_03214 0.34 -1.3 513,170 - MPMX19_03214 0.34 -0.3 513,170 - MPMX19_03214 0.34 -1.1 513,170 - MPMX19_03214 0.34 +0.3 513,224 + MPMX19_03214 0.38 +0.3 513,224 + MPMX19_03214 0.38 +0.3 513,224 + MPMX19_03214 0.38 -1.3 513,224 + MPMX19_03214 0.38 +0.5 513,224 + MPMX19_03214 0.38 -0.4 513,224 + MPMX19_03214 0.38 -1.8 513,224 + MPMX19_03214 0.38 -0.8 513,224 + MPMX19_03214 0.38 -0.9 513,224 + MPMX19_03214 0.38 +0.1 513,224 + MPMX19_03214 0.38 -0.1 513,225 - MPMX19_03214 0.38 +1.7 513,225 - MPMX19_03214 0.38 -0.8 513,225 - MPMX19_03214 0.38 -1.1 513,225 - MPMX19_03214 0.38 -1.6 513,225 - MPMX19_03214 0.38 -0.6 513,225 - MPMX19_03214 0.38 -0.7 513,225 - MPMX19_03214 0.38 -0.3 513,226 + MPMX19_03214 0.38 -0.6 513,226 + MPMX19_03214 0.38 -0.8 513,226 + MPMX19_03214 0.38 -1.7 513,226 + MPMX19_03214 0.38 -1.1 513,226 + MPMX19_03214 0.38 +0.5 513,226 + MPMX19_03214 0.38 +0.2 513,226 + MPMX19_03214 0.38 -0.3 513,226 + MPMX19_03214 0.38 -0.4 513,227 - MPMX19_03214 0.38 +0.4 513,227 - MPMX19_03214 0.38 +1.9 513,227 - MPMX19_03214 0.38 -0.2 513,227 - MPMX19_03214 0.38 +0.5 513,227 - MPMX19_03214 0.38 -0.3 513,227 - MPMX19_03214 0.38 -1.6 513,227 - MPMX19_03214 0.38 -1.0 513,227 - MPMX19_03214 0.38 -2.1 513,227 - MPMX19_03214 0.38 +0.7 513,227 - MPMX19_03214 0.38 +0.7 513,227 - MPMX19_03214 0.38 -1.1 513,227 - MPMX19_03214 0.38 -0.9 513,516 + MPMX19_03214 0.58 -1.8 513,516 + MPMX19_03214 0.58 -1.0 513,516 + MPMX19_03214 0.58 +0.6 513,516 + MPMX19_03214 0.58 -0.3 513,516 + MPMX19_03214 0.58 +0.2 513,516 + MPMX19_03214 0.58 -0.2 513,516 + MPMX19_03214 0.58 -0.1 513,516 + MPMX19_03214 0.58 -0.8 513,517 - MPMX19_03214 0.58 -1.3 513,517 - MPMX19_03214 0.58 -0.6 513,517 - MPMX19_03214 0.58 +0.1 513,517 - MPMX19_03214 0.58 +0.9 513,517 - MPMX19_03214 0.58 -2.1 513,517 - MPMX19_03214 0.58 -0.3 513,517 - MPMX19_03214 0.58 -0.9 513,517 - MPMX19_03214 0.58 +0.6 513,614 + MPMX19_03214 0.65 -0.6 513,614 + MPMX19_03214 0.65 +0.7 513,614 + MPMX19_03214 0.65 -0.8 513,614 + MPMX19_03214 0.65 +0.4 513,614 + MPMX19_03214 0.65 -1.1 513,614 + MPMX19_03214 0.65 -0.3 513,614 + MPMX19_03214 0.65 +0.1 513,615 - MPMX19_03214 0.65 -0.6 513,615 - MPMX19_03214 0.65 +0.6 513,615 - MPMX19_03214 0.65 -0.6 513,615 - MPMX19_03214 0.65 -1.1 513,615 - MPMX19_03214 0.65 -0.0
Or see this region's nucleotide sequence