Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03193 and MPMX19_03194 are separated by 49 nucleotides MPMX19_03194 and MPMX19_03195 are separated by 278 nucleotides MPMX19_03195 and MPMX19_03196 are separated by 68 nucleotides MPMX19_03196 and MPMX19_03197 are separated by 363 nucleotides MPMX19_03197 and MPMX19_03198 overlap by 4 nucleotides MPMX19_03198 and MPMX19_03199 are separated by 4 nucleotides
MPMX19_03193: MPMX19_03193 - hypothetical protein, at 490,877 to 491,161
_03193
MPMX19_03194: MPMX19_03194 - hypothetical protein, at 491,211 to 491,366
_03194
MPMX19_03195: MPMX19_03195 - hypothetical protein, at 491,645 to 491,947
_03195
MPMX19_03196: MPMX19_03196 - hypothetical protein, at 492,016 to 492,756
_03196
MPMX19_03197: MPMX19_03197 - hypothetical protein, at 493,120 to 493,443
_03197
MPMX19_03198: MPMX19_03198 - hypothetical protein, at 493,440 to 493,682
_03198
MPMX19_03199: MPMX19_03199 - hypothetical protein, at 493,687 to 494,049
_03199
Position (kb) 492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.064 kb on + strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.065 kb on - strand, within MPMX19_03193 at 491.123 kb on + strand, within MPMX19_03193 at 491.123 kb on + strand, within MPMX19_03193 at 491.212 kb on + strand at 491.213 kb on - strand at 491.275 kb on + strand, within MPMX19_03194 at 491.275 kb on + strand, within MPMX19_03194 at 491.275 kb on + strand, within MPMX19_03194 at 491.399 kb on - strand at 491.455 kb on - strand at 491.498 kb on + strand at 491.498 kb on + strand at 491.498 kb on + strand at 491.499 kb on - strand at 491.524 kb on + strand at 491.598 kb on + strand at 491.599 kb on - strand at 491.681 kb on + strand, within MPMX19_03195 at 491.681 kb on + strand, within MPMX19_03195 at 491.682 kb on - strand, within MPMX19_03195 at 491.682 kb on - strand, within MPMX19_03195 at 491.961 kb on - strand at 491.972 kb on + strand at 491.972 kb on + strand at 491.972 kb on + strand at 491.982 kb on - strand at 491.982 kb on - strand at 492.040 kb on + strand at 492.040 kb on + strand at 492.040 kb on + strand at 492.041 kb on - strand at 492.041 kb on - strand at 492.041 kb on - strand at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.196 kb on + strand, within MPMX19_03196 at 492.197 kb on - strand, within MPMX19_03196 at 492.197 kb on - strand, within MPMX19_03196 at 492.488 kb on + strand, within MPMX19_03196 at 492.489 kb on - strand, within MPMX19_03196 at 492.816 kb on + strand at 492.816 kb on + strand at 492.984 kb on + strand at 493.119 kb on + strand at 493.120 kb on - strand at 493.120 kb on - strand at 493.155 kb on + strand, within MPMX19_03197 at 493.155 kb on + strand, within MPMX19_03197 at 493.156 kb on - strand, within MPMX19_03197 at 493.198 kb on + strand, within MPMX19_03197 at 493.198 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.365 kb on + strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.366 kb on - strand, within MPMX19_03197 at 493.425 kb on - strand at 493.548 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.583 kb on + strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.584 kb on - strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.634 kb on + strand, within MPMX19_03198 at 493.635 kb on - strand, within MPMX19_03198 at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.694 kb on + strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.695 kb on - strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.705 kb on + strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.706 kb on - strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.707 kb on + strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand at 493.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 491,064 + MPMX19_03193 0.66 -1.7 491,064 + MPMX19_03193 0.66 +0.2 491,064 + MPMX19_03193 0.66 -0.5 491,064 + MPMX19_03193 0.66 -0.2 491,064 + MPMX19_03193 0.66 -0.6 491,064 + MPMX19_03193 0.66 +0.4 491,064 + MPMX19_03193 0.66 +0.2 491,064 + MPMX19_03193 0.66 -0.4 491,064 + MPMX19_03193 0.66 +0.7 491,064 + MPMX19_03193 0.66 -0.2 491,065 - MPMX19_03193 0.66 -0.6 491,065 - MPMX19_03193 0.66 -0.2 491,065 - MPMX19_03193 0.66 +1.0 491,065 - MPMX19_03193 0.66 -1.2 491,065 - MPMX19_03193 0.66 -0.0 491,065 - MPMX19_03193 0.66 +0.9 491,065 - MPMX19_03193 0.66 -3.1 491,065 - MPMX19_03193 0.66 -0.3 491,123 + MPMX19_03193 0.86 -0.6 491,123 + MPMX19_03193 0.86 -1.6 491,212 + +1.0 491,213 - -0.8 491,275 + MPMX19_03194 0.41 -1.8 491,275 + MPMX19_03194 0.41 -0.2 491,275 + MPMX19_03194 0.41 -0.1 491,399 - -0.0 491,455 - -0.2 491,498 + +0.0 491,498 + +0.2 491,498 + -1.3 491,499 - -2.1 491,524 + +0.2 491,598 + +0.2 491,599 - -2.4 491,681 + MPMX19_03195 0.12 +1.1 491,681 + MPMX19_03195 0.12 +0.1 491,682 - MPMX19_03195 0.12 -0.1 491,682 - MPMX19_03195 0.12 -0.1 491,961 - -1.3 491,972 + -0.9 491,972 + -0.3 491,972 + -1.1 491,982 - -1.4 491,982 - -2.4 492,040 + -1.0 492,040 + -0.6 492,040 + +0.9 492,041 - +0.2 492,041 - +0.9 492,041 - +0.7 492,196 + MPMX19_03196 0.24 -1.9 492,196 + MPMX19_03196 0.24 -1.1 492,196 + MPMX19_03196 0.24 +1.7 492,196 + MPMX19_03196 0.24 -1.6 492,197 - MPMX19_03196 0.24 -1.9 492,197 - MPMX19_03196 0.24 -1.2 492,488 + MPMX19_03196 0.64 -0.6 492,489 - MPMX19_03196 0.64 -2.0 492,816 + -2.0 492,816 + +0.7 492,984 + -0.1 493,119 + -0.3 493,120 - -0.6 493,120 - -0.6 493,155 + MPMX19_03197 0.11 -0.0 493,155 + MPMX19_03197 0.11 -0.5 493,156 - MPMX19_03197 0.11 -1.2 493,198 + MPMX19_03197 0.24 -1.0 493,198 + MPMX19_03197 0.24 -0.9 493,365 + MPMX19_03197 0.76 +1.3 493,365 + MPMX19_03197 0.76 +1.3 493,365 + MPMX19_03197 0.76 -0.8 493,365 + MPMX19_03197 0.76 +0.3 493,366 - MPMX19_03197 0.76 +0.1 493,366 - MPMX19_03197 0.76 -1.9 493,425 - -0.9 493,548 + MPMX19_03198 0.44 -1.3 493,583 + MPMX19_03198 0.59 -0.1 493,583 + MPMX19_03198 0.59 -0.3 493,584 - MPMX19_03198 0.59 +0.3 493,584 - MPMX19_03198 0.59 -0.6 493,584 - MPMX19_03198 0.59 -0.3 493,584 - MPMX19_03198 0.59 -0.3 493,584 - MPMX19_03198 0.59 +1.0 493,584 - MPMX19_03198 0.59 -0.3 493,584 - MPMX19_03198 0.59 -1.5 493,584 - MPMX19_03198 0.59 -1.3 493,634 + MPMX19_03198 0.80 -0.3 493,634 + MPMX19_03198 0.80 +0.9 493,634 + MPMX19_03198 0.80 +0.1 493,634 + MPMX19_03198 0.80 -1.0 493,635 - MPMX19_03198 0.80 -0.2 493,694 + -0.1 493,694 + -0.6 493,694 + +1.0 493,694 + -0.3 493,694 + -0.9 493,694 + -1.0 493,694 + +0.2 493,694 + +0.1 493,694 + -1.1 493,695 - -0.7 493,695 - +0.5 493,695 - +0.7 493,695 - +0.0 493,695 - -0.8 493,695 - -0.1 493,705 + -0.7 493,705 + +0.1 493,705 + -0.1 493,705 + -2.0 493,705 + +1.0 493,705 + +0.2 493,705 + -0.8 493,705 + -1.0 493,705 + -0.7 493,705 + -2.6 493,705 + -1.6 493,706 - -0.3 493,706 - -0.8 493,706 - -0.1 493,706 - -0.9 493,707 + +0.4 493,707 + -2.2 493,707 + -0.1 493,707 + -2.6 493,707 + -0.7 493,707 + -0.0 493,707 + +0.2 493,707 + -0.4 493,707 + -1.6 493,708 - +0.7 493,708 - -2.4 493,708 - +0.5 493,708 - +1.1 493,708 - -0.7 493,708 - -1.5 493,708 - +0.0 493,708 - -1.6 493,708 - -0.8
Or see this region's nucleotide sequence