Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03167 and MPMX19_03168 overlap by 4 nucleotides MPMX19_03168 and MPMX19_03169 are separated by 89 nucleotides MPMX19_03169 and MPMX19_03170 are separated by 28 nucleotides
MPMX19_03167: MPMX19_03167 - D-alanine--D-alanyl carrier protein ligase, at 459,110 to 463,228
_03167
MPMX19_03168: MPMX19_03168 - hypothetical protein, at 463,225 to 463,863
_03168
MPMX19_03169: MPMX19_03169 - Dihydroanticapsin 7-dehydrogenase, at 463,953 to 464,732
_03169
MPMX19_03170: MPMX19_03170 - L-lactate transporter, at 464,761 to 466,041
_03170
Position (kb) 463
464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.225 kb on + strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.226 kb on - strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.459 kb on + strand, within MPMX19_03167 at 462.540 kb on + strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.541 kb on - strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.564 kb on + strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.565 kb on - strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.627 kb on + strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.628 kb on - strand, within MPMX19_03167 at 462.636 kb on + strand, within MPMX19_03167 at 462.637 kb on - strand, within MPMX19_03167 at 462.637 kb on - strand, within MPMX19_03167 at 462.858 kb on + strand at 462.858 kb on + strand at 462.858 kb on + strand at 462.858 kb on + strand at 462.858 kb on + strand at 462.859 kb on - strand at 462.859 kb on - strand at 462.859 kb on - strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.005 kb on + strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.006 kb on - strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.026 kb on + strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.027 kb on - strand at 463.287 kb on + strand at 463.287 kb on + strand at 463.288 kb on - strand at 463.288 kb on - strand at 463.288 kb on - strand at 463.344 kb on + strand, within MPMX19_03168 at 463.345 kb on - strand, within MPMX19_03168 at 463.345 kb on - strand, within MPMX19_03168 at 463.345 kb on - strand, within MPMX19_03168 at 463.345 kb on - strand, within MPMX19_03168 at 463.479 kb on + strand, within MPMX19_03168 at 463.479 kb on + strand, within MPMX19_03168 at 463.480 kb on - strand, within MPMX19_03168 at 463.480 kb on - strand, within MPMX19_03168 at 463.489 kb on + strand, within MPMX19_03168 at 463.489 kb on + strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.490 kb on - strand, within MPMX19_03168 at 463.545 kb on + strand, within MPMX19_03168 at 463.545 kb on + strand, within MPMX19_03168 at 463.545 kb on + strand, within MPMX19_03168 at 463.545 kb on + strand, within MPMX19_03168 at 463.546 kb on - strand, within MPMX19_03168 at 463.546 kb on - strand, within MPMX19_03168 at 463.546 kb on - strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.698 kb on + strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.699 kb on - strand, within MPMX19_03168 at 463.931 kb on + strand at 463.931 kb on + strand at 463.932 kb on - strand at 463.932 kb on - strand at 464.439 kb on + strand, within MPMX19_03169 at 464.439 kb on + strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.440 kb on - strand, within MPMX19_03169 at 464.730 kb on + strand at 464.730 kb on + strand at 464.730 kb on + strand at 464.730 kb on + strand at 464.731 kb on - strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.809 kb on + strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.810 kb on - strand at 464.832 kb on + strand at 464.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 462,225 + MPMX19_03167 0.76 -1.1 462,225 + MPMX19_03167 0.76 +0.4 462,225 + MPMX19_03167 0.76 -1.4 462,225 + MPMX19_03167 0.76 +0.1 462,225 + MPMX19_03167 0.76 -0.7 462,225 + MPMX19_03167 0.76 -1.1 462,226 - MPMX19_03167 0.76 +1.3 462,226 - MPMX19_03167 0.76 +0.7 462,226 - MPMX19_03167 0.76 -0.6 462,226 - MPMX19_03167 0.76 +0.5 462,226 - MPMX19_03167 0.76 +0.7 462,226 - MPMX19_03167 0.76 -0.6 462,226 - MPMX19_03167 0.76 -1.1 462,226 - MPMX19_03167 0.76 +0.9 462,226 - MPMX19_03167 0.76 -0.9 462,226 - MPMX19_03167 0.76 +0.1 462,226 - MPMX19_03167 0.76 -2.2 462,226 - MPMX19_03167 0.76 +0.1 462,226 - MPMX19_03167 0.76 -0.5 462,226 - MPMX19_03167 0.76 -1.6 462,226 - MPMX19_03167 0.76 +1.2 462,226 - MPMX19_03167 0.76 +0.0 462,226 - MPMX19_03167 0.76 -1.0 462,226 - MPMX19_03167 0.76 -1.1 462,226 - MPMX19_03167 0.76 +0.7 462,459 + MPMX19_03167 0.81 +0.7 462,459 + MPMX19_03167 0.81 +0.2 462,459 + MPMX19_03167 0.81 -1.8 462,459 + MPMX19_03167 0.81 -1.9 462,459 + MPMX19_03167 0.81 +0.3 462,459 + MPMX19_03167 0.81 +0.7 462,459 + MPMX19_03167 0.81 +0.5 462,540 + MPMX19_03167 0.83 +0.4 462,541 - MPMX19_03167 0.83 -1.3 462,541 - MPMX19_03167 0.83 -1.0 462,541 - MPMX19_03167 0.83 -0.5 462,541 - MPMX19_03167 0.83 -0.1 462,541 - MPMX19_03167 0.83 -1.9 462,541 - MPMX19_03167 0.83 -0.5 462,564 + MPMX19_03167 0.84 -0.9 462,564 + MPMX19_03167 0.84 -0.4 462,564 + MPMX19_03167 0.84 -0.0 462,564 + MPMX19_03167 0.84 -1.9 462,564 + MPMX19_03167 0.84 -0.2 462,564 + MPMX19_03167 0.84 -0.7 462,565 - MPMX19_03167 0.84 -0.5 462,565 - MPMX19_03167 0.84 -0.5 462,565 - MPMX19_03167 0.84 -0.9 462,565 - MPMX19_03167 0.84 -1.5 462,565 - MPMX19_03167 0.84 -1.3 462,565 - MPMX19_03167 0.84 -1.9 462,627 + MPMX19_03167 0.85 +0.0 462,627 + MPMX19_03167 0.85 +0.7 462,627 + MPMX19_03167 0.85 +0.2 462,627 + MPMX19_03167 0.85 +0.5 462,627 + MPMX19_03167 0.85 -0.5 462,627 + MPMX19_03167 0.85 +0.7 462,627 + MPMX19_03167 0.85 -0.6 462,627 + MPMX19_03167 0.85 +0.3 462,627 + MPMX19_03167 0.85 +0.3 462,627 + MPMX19_03167 0.85 -1.0 462,627 + MPMX19_03167 0.85 +0.4 462,627 + MPMX19_03167 0.85 +0.0 462,627 + MPMX19_03167 0.85 -0.5 462,627 + MPMX19_03167 0.85 -1.1 462,627 + MPMX19_03167 0.85 -0.3 462,627 + MPMX19_03167 0.85 -1.6 462,627 + MPMX19_03167 0.85 +0.9 462,627 + MPMX19_03167 0.85 -1.6 462,627 + MPMX19_03167 0.85 +0.0 462,627 + MPMX19_03167 0.85 -0.9 462,627 + MPMX19_03167 0.85 +0.1 462,627 + MPMX19_03167 0.85 +1.7 462,627 + MPMX19_03167 0.85 -0.5 462,627 + MPMX19_03167 0.85 +0.7 462,627 + MPMX19_03167 0.85 -0.6 462,628 - MPMX19_03167 0.85 -0.7 462,628 - MPMX19_03167 0.85 -0.1 462,628 - MPMX19_03167 0.85 -0.9 462,628 - MPMX19_03167 0.85 -0.8 462,628 - MPMX19_03167 0.85 -0.6 462,628 - MPMX19_03167 0.85 -1.1 462,628 - MPMX19_03167 0.85 +1.0 462,628 - MPMX19_03167 0.85 +0.2 462,628 - MPMX19_03167 0.85 -0.6 462,628 - MPMX19_03167 0.85 -1.3 462,628 - MPMX19_03167 0.85 -1.5 462,628 - MPMX19_03167 0.85 +0.3 462,628 - MPMX19_03167 0.85 -0.5 462,628 - MPMX19_03167 0.85 -0.6 462,628 - MPMX19_03167 0.85 -1.0 462,628 - MPMX19_03167 0.85 +0.1 462,628 - MPMX19_03167 0.85 -1.4 462,628 - MPMX19_03167 0.85 +0.1 462,628 - MPMX19_03167 0.85 +0.7 462,628 - MPMX19_03167 0.85 +0.4 462,628 - MPMX19_03167 0.85 -0.3 462,628 - MPMX19_03167 0.85 -0.2 462,628 - MPMX19_03167 0.85 -0.8 462,628 - MPMX19_03167 0.85 -1.8 462,628 - MPMX19_03167 0.85 +0.1 462,628 - MPMX19_03167 0.85 -2.0 462,636 + MPMX19_03167 0.86 +0.2 462,637 - MPMX19_03167 0.86 +1.0 462,637 - MPMX19_03167 0.86 +2.0 462,858 + +0.4 462,858 + -0.4 462,858 + -1.5 462,858 + +1.1 462,858 + -1.1 462,859 - -0.9 462,859 - +1.3 462,859 - +1.0 463,005 + +0.3 463,005 + -0.5 463,005 + +0.7 463,005 + -1.1 463,005 + -1.5 463,005 + -0.2 463,005 + -0.8 463,005 + -0.3 463,005 + +0.5 463,005 + +0.8 463,005 + +1.1 463,005 + -0.9 463,005 + -1.5 463,005 + -1.4 463,006 - -0.9 463,006 - +0.3 463,006 - -0.7 463,006 - +0.3 463,006 - -0.6 463,006 - +0.1 463,006 - +0.2 463,006 - -0.4 463,006 - -0.1 463,006 - -0.5 463,006 - -1.1 463,006 - -1.1 463,006 - +0.4 463,006 - -0.6 463,006 - -2.2 463,006 - +0.1 463,006 - +0.7 463,006 - -1.1 463,006 - -0.9 463,006 - -0.9 463,006 - +0.3 463,006 - -1.1 463,006 - -0.6 463,006 - -2.0 463,026 + -0.9 463,026 + +0.4 463,026 + -1.1 463,026 + +0.4 463,026 + -1.0 463,026 + +0.1 463,026 + +0.7 463,026 + -0.6 463,026 + -0.6 463,026 + +0.1 463,026 + +0.4 463,026 + +0.4 463,026 + -0.5 463,027 - -1.8 463,027 - +0.0 463,027 - +1.3 463,027 - -0.2 463,027 - -0.1 463,027 - -1.9 463,287 + +0.7 463,287 + +1.3 463,288 - -0.3 463,288 - +0.7 463,288 - -0.9 463,344 + MPMX19_03168 0.19 +1.0 463,345 - MPMX19_03168 0.19 -1.8 463,345 - MPMX19_03168 0.19 -1.8 463,345 - MPMX19_03168 0.19 +1.2 463,345 - MPMX19_03168 0.19 -0.2 463,479 + MPMX19_03168 0.40 -0.3 463,479 + MPMX19_03168 0.40 -1.2 463,480 - MPMX19_03168 0.40 -0.8 463,480 - MPMX19_03168 0.40 -1.5 463,489 + MPMX19_03168 0.41 +0.3 463,489 + MPMX19_03168 0.41 -2.0 463,490 - MPMX19_03168 0.41 -1.5 463,490 - MPMX19_03168 0.41 +0.6 463,490 - MPMX19_03168 0.41 -1.6 463,490 - MPMX19_03168 0.41 +1.7 463,490 - MPMX19_03168 0.41 -0.9 463,490 - MPMX19_03168 0.41 -0.6 463,545 + MPMX19_03168 0.50 -0.4 463,545 + MPMX19_03168 0.50 -2.8 463,545 + MPMX19_03168 0.50 +0.4 463,545 + MPMX19_03168 0.50 +0.1 463,546 - MPMX19_03168 0.50 -1.8 463,546 - MPMX19_03168 0.50 -0.5 463,546 - MPMX19_03168 0.50 -0.8 463,698 + MPMX19_03168 0.74 -0.3 463,698 + MPMX19_03168 0.74 -1.1 463,698 + MPMX19_03168 0.74 -0.5 463,698 + MPMX19_03168 0.74 -0.3 463,698 + MPMX19_03168 0.74 -2.0 463,698 + MPMX19_03168 0.74 +0.1 463,698 + MPMX19_03168 0.74 +0.1 463,698 + MPMX19_03168 0.74 -1.3 463,699 - MPMX19_03168 0.74 -1.1 463,699 - MPMX19_03168 0.74 -1.8 463,699 - MPMX19_03168 0.74 +0.9 463,699 - MPMX19_03168 0.74 -1.5 463,699 - MPMX19_03168 0.74 +0.1 463,699 - MPMX19_03168 0.74 +0.5 463,699 - MPMX19_03168 0.74 -1.1 463,931 + +0.1 463,931 + -0.0 463,932 - -0.9 463,932 - -1.0 464,439 + MPMX19_03169 0.62 -1.2 464,439 + MPMX19_03169 0.62 -0.5 464,440 - MPMX19_03169 0.62 -0.0 464,440 - MPMX19_03169 0.62 +0.7 464,440 - MPMX19_03169 0.62 +0.9 464,730 + -0.6 464,730 + -2.5 464,730 + -1.1 464,730 + -1.6 464,731 - -0.6 464,809 + -0.1 464,809 + +0.4 464,809 + -1.0 464,809 + -1.5 464,809 + +1.4 464,809 + -1.2 464,809 + +0.1 464,809 + -0.1 464,809 + -1.1 464,809 + -0.1 464,809 + -1.7 464,809 + -1.1 464,809 + -0.9 464,810 - +0.4 464,810 - -0.7 464,810 - -1.5 464,810 - +0.5 464,810 - -1.0 464,810 - -1.4 464,810 - -0.0 464,810 - -1.0 464,810 - +0.4 464,810 - -0.1 464,810 - -0.3 464,810 - +0.4 464,810 - -1.9 464,810 - +0.2 464,832 + -0.7 464,833 - -2.0
Or see this region's nucleotide sequence