Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03010 and MPMX19_03011 are separated by 100 nucleotides MPMX19_03011 and MPMX19_03012 overlap by 61 nucleotides MPMX19_03012 and MPMX19_03013 are separated by 107 nucleotides
MPMX19_03010: MPMX19_03010 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 273,796 to 274,458
_03010
MPMX19_03011: MPMX19_03011 - hypothetical protein, at 274,559 to 275,140
_03011
MPMX19_03012: MPMX19_03012 - hypothetical protein, at 275,080 to 275,538
_03012
MPMX19_03013: MPMX19_03013 - Aldehyde-alcohol dehydrogenase, at 275,646 to 278,312
_03013
Position (kb) 274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 273.637 kb on + strand at 273.637 kb on + strand at 273.637 kb on + strand at 273.638 kb on - strand at 273.638 kb on - strand at 273.638 kb on - strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.808 kb on + strand at 273.809 kb on - strand at 274.269 kb on + strand, within MPMX19_03010 at 274.270 kb on - strand, within MPMX19_03010 at 274.561 kb on - strand at 274.668 kb on + strand, within MPMX19_03011 at 274.669 kb on - strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.848 kb on + strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.849 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.924 kb on - strand, within MPMX19_03011 at 274.971 kb on + strand, within MPMX19_03011 at 275.505 kb on + strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.506 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.717 kb on - strand at 275.729 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.732 kb on - strand at 275.774 kb on - strand at 276.013 kb on + strand, within MPMX19_03013
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 273,637 + -0.6 273,637 + +1.1 273,637 + -1.1 273,638 - +0.3 273,638 - -0.4 273,638 - +0.7 273,808 + +1.0 273,808 + +0.7 273,808 + -0.7 273,808 + +2.0 273,808 + -0.4 273,808 + -0.3 273,809 - +0.2 274,269 + MPMX19_03010 0.71 -0.6 274,270 - MPMX19_03010 0.71 +0.3 274,561 - -2.9 274,668 + MPMX19_03011 0.19 -0.2 274,669 - MPMX19_03011 0.19 -0.3 274,848 + MPMX19_03011 0.50 -0.6 274,848 + MPMX19_03011 0.50 -2.4 274,848 + MPMX19_03011 0.50 -1.4 274,849 - MPMX19_03011 0.50 -2.1 274,849 - MPMX19_03011 0.50 -0.4 274,849 - MPMX19_03011 0.50 -0.2 274,849 - MPMX19_03011 0.50 -0.4 274,924 - MPMX19_03011 0.63 -2.1 274,924 - MPMX19_03011 0.63 +2.3 274,924 - MPMX19_03011 0.63 +0.6 274,971 + MPMX19_03011 0.71 -0.6 275,505 + -0.4 275,506 - -0.5 275,506 - +0.9 275,506 - -0.1 275,506 - -0.1 275,717 - +0.2 275,717 - -1.7 275,717 - -1.7 275,717 - -0.8 275,717 - -2.2 275,717 - -0.7 275,729 - -2.4 275,732 - -1.1 275,732 - -0.1 275,732 - -1.1 275,732 - -0.8 275,732 - -2.1 275,732 - -0.8 275,732 - -1.3 275,774 - -0.1 276,013 + MPMX19_03013 0.14 -1.3
Or see this region's nucleotide sequence