Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02962 and MPMX19_02963 are separated by 246 nucleotides MPMX19_02963 and MPMX19_02964 overlap by 1 nucleotides MPMX19_02964 and MPMX19_02965 are separated by 30 nucleotides
MPMX19_02962: MPMX19_02962 - hypothetical protein, at 223,362 to 224,165
_02962
MPMX19_02963: MPMX19_02963 - hypothetical protein, at 224,412 to 224,672
_02963
MPMX19_02964: MPMX19_02964 - hypothetical protein, at 224,672 to 224,851
_02964
MPMX19_02965: MPMX19_02965 - hypothetical protein, at 224,882 to 225,073
_02965
Position (kb) 223
224
225 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 222.397 kb on + strand at 222.397 kb on + strand at 222.397 kb on + strand at 222.398 kb on - strand at 222.466 kb on + strand at 222.477 kb on + strand at 222.480 kb on - strand at 222.486 kb on + strand at 222.487 kb on - strand at 222.509 kb on + strand at 222.521 kb on - strand at 222.531 kb on + strand at 222.651 kb on - strand at 222.651 kb on - strand at 222.738 kb on + strand at 222.739 kb on - strand at 222.791 kb on - strand at 222.840 kb on - strand at 223.018 kb on + strand at 223.085 kb on - strand at 223.114 kb on - strand at 223.165 kb on - strand at 223.229 kb on - strand at 223.261 kb on + strand at 223.265 kb on + strand at 223.287 kb on - strand at 223.316 kb on + strand at 223.493 kb on + strand, within MPMX19_02962 at 223.495 kb on + strand, within MPMX19_02962 at 223.557 kb on - strand, within MPMX19_02962 at 223.766 kb on + strand, within MPMX19_02962 at 223.766 kb on + strand, within MPMX19_02962 at 223.832 kb on + strand, within MPMX19_02962 at 223.832 kb on + strand, within MPMX19_02962 at 223.832 kb on + strand, within MPMX19_02962 at 223.832 kb on + strand, within MPMX19_02962 at 223.835 kb on - strand, within MPMX19_02962 at 223.835 kb on - strand, within MPMX19_02962 at 223.881 kb on - strand, within MPMX19_02962 at 223.885 kb on - strand, within MPMX19_02962 at 223.959 kb on + strand, within MPMX19_02962 at 224.013 kb on + strand, within MPMX19_02962 at 224.013 kb on + strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.014 kb on - strand, within MPMX19_02962 at 224.055 kb on + strand, within MPMX19_02962 at 224.056 kb on - strand, within MPMX19_02962 at 224.056 kb on - strand, within MPMX19_02962 at 224.135 kb on + strand at 224.136 kb on - strand at 224.177 kb on - strand at 224.185 kb on + strand at 224.185 kb on + strand at 224.185 kb on + strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.186 kb on - strand at 224.187 kb on + strand at 224.187 kb on + strand at 224.187 kb on + strand at 224.188 kb on - strand at 224.188 kb on - strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.204 kb on + strand at 224.204 kb on + strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.205 kb on - strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.279 kb on + strand at 224.280 kb on - strand at 224.280 kb on - strand at 224.330 kb on - strand at 224.330 kb on - strand at 224.371 kb on - strand at 224.371 kb on - strand at 224.444 kb on + strand, within MPMX19_02963 at 224.488 kb on + strand, within MPMX19_02963 at 224.489 kb on - strand, within MPMX19_02963 at 224.489 kb on - strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.506 kb on + strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.507 kb on - strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.508 kb on + strand, within MPMX19_02963 at 224.509 kb on - strand, within MPMX19_02963 at 224.509 kb on - strand, within MPMX19_02963 at 224.635 kb on + strand, within MPMX19_02963 at 224.636 kb on - strand, within MPMX19_02963 at 224.788 kb on - strand, within MPMX19_02964 at 224.852 kb on - strand at 224.873 kb on - strand at 224.873 kb on - strand at 224.873 kb on - strand at 224.942 kb on - strand, within MPMX19_02965 at 224.942 kb on - strand, within MPMX19_02965 at 224.962 kb on + strand, within MPMX19_02965 at 224.963 kb on - strand, within MPMX19_02965 at 224.963 kb on - strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.964 kb on + strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 224.965 kb on - strand, within MPMX19_02965 at 225.067 kb on - strand at 225.092 kb on + strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.093 kb on - strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.110 kb on + strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.111 kb on - strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.112 kb on + strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand at 225.113 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 222,397 + +0.3 222,397 + -1.5 222,397 + -0.1 222,398 - -1.0 222,466 + -2.4 222,477 + +0.5 222,480 - -0.5 222,486 + -0.1 222,487 - -0.2 222,509 + -0.7 222,521 - -0.1 222,531 + -0.4 222,651 - +0.2 222,651 - +0.2 222,738 + -1.3 222,739 - -0.1 222,791 - -0.1 222,840 - +0.7 223,018 + -0.9 223,085 - -2.5 223,114 - -2.5 223,165 - -1.8 223,229 - +0.7 223,261 + -2.0 223,265 + -0.3 223,287 - -1.0 223,316 + -0.8 223,493 + MPMX19_02962 0.16 -0.6 223,495 + MPMX19_02962 0.17 -2.2 223,557 - MPMX19_02962 0.24 -0.6 223,766 + MPMX19_02962 0.50 +0.9 223,766 + MPMX19_02962 0.50 -2.4 223,832 + MPMX19_02962 0.58 -0.3 223,832 + MPMX19_02962 0.58 -0.5 223,832 + MPMX19_02962 0.58 -0.1 223,832 + MPMX19_02962 0.58 +1.1 223,835 - MPMX19_02962 0.59 -1.4 223,835 - MPMX19_02962 0.59 -0.7 223,881 - MPMX19_02962 0.65 -0.7 223,885 - MPMX19_02962 0.65 -2.4 223,959 + MPMX19_02962 0.74 -2.2 224,013 + MPMX19_02962 0.81 -2.3 224,013 + MPMX19_02962 0.81 -1.5 224,014 - MPMX19_02962 0.81 -0.7 224,014 - MPMX19_02962 0.81 -1.3 224,014 - MPMX19_02962 0.81 -1.3 224,014 - MPMX19_02962 0.81 -0.7 224,055 + MPMX19_02962 0.86 -1.1 224,056 - MPMX19_02962 0.86 -0.1 224,056 - MPMX19_02962 0.86 -1.9 224,135 + +1.6 224,136 - -0.8 224,177 - -0.9 224,185 + -1.9 224,185 + +0.0 224,185 + -0.0 224,186 - +0.4 224,186 - +0.1 224,186 - -2.4 224,186 - -2.1 224,187 + -0.9 224,187 + +0.2 224,187 + -1.1 224,188 - -0.9 224,188 - -1.4 224,201 - +0.2 224,201 - -2.5 224,201 - -0.6 224,204 + -2.2 224,204 + +1.7 224,205 - -2.2 224,205 - -0.4 224,205 - -0.6 224,205 - +1.0 224,279 + -1.1 224,279 + -0.8 224,279 + +1.0 224,279 + -1.4 224,280 - +0.6 224,280 - -0.2 224,330 - -0.7 224,330 - +0.3 224,371 - -0.6 224,371 - -1.0 224,444 + MPMX19_02963 0.12 -0.3 224,488 + MPMX19_02963 0.29 -0.3 224,489 - MPMX19_02963 0.30 +1.0 224,489 - MPMX19_02963 0.30 -1.1 224,506 + MPMX19_02963 0.36 -2.0 224,506 + MPMX19_02963 0.36 -1.0 224,506 + MPMX19_02963 0.36 +0.1 224,506 + MPMX19_02963 0.36 -3.1 224,506 + MPMX19_02963 0.36 -0.9 224,506 + MPMX19_02963 0.36 -1.4 224,506 + MPMX19_02963 0.36 -0.9 224,506 + MPMX19_02963 0.36 -1.6 224,506 + MPMX19_02963 0.36 +0.7 224,506 + MPMX19_02963 0.36 -2.9 224,506 + MPMX19_02963 0.36 -2.1 224,506 + MPMX19_02963 0.36 +1.1 224,506 + MPMX19_02963 0.36 +1.0 224,506 + MPMX19_02963 0.36 -0.9 224,506 + MPMX19_02963 0.36 +0.7 224,506 + MPMX19_02963 0.36 -2.3 224,507 - MPMX19_02963 0.36 -0.4 224,507 - MPMX19_02963 0.36 -0.6 224,507 - MPMX19_02963 0.36 -1.3 224,507 - MPMX19_02963 0.36 -2.4 224,507 - MPMX19_02963 0.36 -0.1 224,507 - MPMX19_02963 0.36 -0.7 224,507 - MPMX19_02963 0.36 -0.2 224,507 - MPMX19_02963 0.36 -0.2 224,507 - MPMX19_02963 0.36 -0.5 224,507 - MPMX19_02963 0.36 -1.2 224,508 + MPMX19_02963 0.37 +0.4 224,508 + MPMX19_02963 0.37 -0.1 224,508 + MPMX19_02963 0.37 -1.3 224,509 - MPMX19_02963 0.37 +0.4 224,509 - MPMX19_02963 0.37 -1.9 224,635 + MPMX19_02963 0.85 -0.1 224,636 - MPMX19_02963 0.86 -2.0 224,788 - MPMX19_02964 0.64 -0.1 224,852 - -0.3 224,873 - -0.5 224,873 - -0.1 224,873 - -1.0 224,942 - MPMX19_02965 0.31 -1.3 224,942 - MPMX19_02965 0.31 +1.3 224,962 + MPMX19_02965 0.42 +0.2 224,963 - MPMX19_02965 0.42 +0.5 224,963 - MPMX19_02965 0.42 -1.4 224,964 + MPMX19_02965 0.43 -1.6 224,964 + MPMX19_02965 0.43 -0.8 224,964 + MPMX19_02965 0.43 -1.1 224,965 - MPMX19_02965 0.43 +0.6 224,965 - MPMX19_02965 0.43 -0.4 224,965 - MPMX19_02965 0.43 +1.0 224,965 - MPMX19_02965 0.43 +0.3 224,965 - MPMX19_02965 0.43 +0.0 225,067 - -0.3 225,092 + +0.4 225,093 - -0.6 225,093 - -0.1 225,093 - -0.1 225,093 - -1.2 225,093 - -2.0 225,110 + +0.1 225,110 + -0.2 225,110 + +0.2 225,110 + -1.4 225,110 + -0.4 225,110 + -1.3 225,110 + -1.8 225,110 + -2.0 225,110 + +0.7 225,110 + -2.4 225,110 + -0.1 225,110 + -0.2 225,110 + -0.7 225,110 + -0.8 225,111 - -0.0 225,111 - -0.4 225,111 - +0.2 225,111 - +1.5 225,111 - -0.6 225,111 - +0.4 225,111 - -0.7 225,111 - -0.2 225,112 + +0.6 225,112 + +0.5 225,112 + -1.9 225,112 + -0.4 225,112 + -0.2 225,112 + -0.5 225,112 + +0.1 225,112 + +0.1 225,112 + +0.4 225,112 + +0.2 225,112 + -0.6 225,112 + -0.1 225,112 + -1.7 225,112 + -0.3 225,112 + +0.2 225,112 + -0.3 225,112 + -0.9 225,113 - +0.9 225,113 - +0.7 225,113 - -1.7 225,113 - +0.1 225,113 - -2.4 225,113 - -1.7 225,113 - -0.8 225,113 - -0.2 225,113 - +0.6 225,113 - -0.6
Or see this region's nucleotide sequence