Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02951

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02950 and MPMX19_02951 are separated by 288 nucleotidesMPMX19_02951 and MPMX19_02952 are separated by 186 nucleotides MPMX19_02950: MPMX19_02950 - Deoxyribose operon repressor, at 208,415 to 209,182 _02950 MPMX19_02951: MPMX19_02951 - Deoxyribose-phosphate aldolase 1, at 209,471 to 210,142 _02951 MPMX19_02952: MPMX19_02952 - Autoinducer 2-binding protein LsrB, at 210,329 to 211,375 _02952 Position (kb) 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2at 208.743 kb on + strand, within MPMX19_02950at 208.744 kb on - strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.980 kb on + strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 208.981 kb on - strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.019 kb on + strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.020 kb on - strand, within MPMX19_02950at 209.032 kb on - strand, within MPMX19_02950at 209.122 kb on - strandat 209.122 kb on - strandat 209.527 kb on + strandat 209.527 kb on + strandat 209.527 kb on + strandat 209.527 kb on + strandat 209.528 kb on - strandat 209.805 kb on + strand, within MPMX19_02951at 209.805 kb on + strand, within MPMX19_02951at 209.806 kb on + strand, within MPMX19_02951at 209.806 kb on - strand, within MPMX19_02951at 209.806 kb on - strand, within MPMX19_02951at 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.164 kb on - strandat 210.164 kb on - strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.169 kb on - strandat 210.169 kb on - strandat 210.169 kb on - strandat 210.169 kb on - strandat 210.455 kb on + strand, within MPMX19_02952at 210.455 kb on + strand, within MPMX19_02952at 210.455 kb on + strand, within MPMX19_02952at 210.455 kb on + strand, within MPMX19_02952at 210.456 kb on - strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.776 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.897 kb on - strand, within MPMX19_02952at 210.897 kb on - strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.972 kb on - strand, within MPMX19_02952at 211.001 kb on + strand, within MPMX19_02952at 211.002 kb on - strand, within MPMX19_02952at 211.002 kb on - strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
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208,743 + MPMX19_02950 0.43 -1.3
208,744 - MPMX19_02950 0.43 +0.4
208,980 + MPMX19_02950 0.74 -1.3
208,980 + MPMX19_02950 0.74 +1.9
208,980 + MPMX19_02950 0.74 +0.6
208,980 + MPMX19_02950 0.74 -1.1
208,980 + MPMX19_02950 0.74 -1.7
208,980 + MPMX19_02950 0.74 +0.1
208,980 + MPMX19_02950 0.74 +0.5
208,980 + MPMX19_02950 0.74 -0.2
208,980 + MPMX19_02950 0.74 -0.4
208,981 - MPMX19_02950 0.74 +0.1
208,981 - MPMX19_02950 0.74 -0.0
208,981 - MPMX19_02950 0.74 -1.6
209,019 + MPMX19_02950 0.79 -1.1
209,019 + MPMX19_02950 0.79 +1.0
209,019 + MPMX19_02950 0.79 -0.7
209,020 - MPMX19_02950 0.79 -0.3
209,020 - MPMX19_02950 0.79 +0.7
209,020 - MPMX19_02950 0.79 -1.0
209,032 - MPMX19_02950 0.80 -0.3
209,122 - +1.7
209,122 - +0.4
209,527 + +0.2
209,527 + -1.6
209,527 + -0.6
209,527 + -0.5
209,528 - +1.1
209,805 + MPMX19_02951 0.50 -1.0
209,805 + MPMX19_02951 0.50 -1.4
209,806 + MPMX19_02951 0.50 -1.6
209,806 - MPMX19_02951 0.50 +2.3
209,806 - MPMX19_02951 0.50 -1.4
210,163 + -1.0
210,163 + -1.2
210,163 + +0.3
210,163 + -0.5
210,163 + -0.7
210,163 + +0.3
210,163 + -1.3
210,164 - -1.6
210,164 - -0.8
210,168 + -0.3
210,168 + +0.1
210,168 + +0.1
210,168 + -1.0
210,169 - -0.8
210,169 - -0.1
210,169 - -2.7
210,169 - -0.8
210,455 + MPMX19_02952 0.12 -0.1
210,455 + MPMX19_02952 0.12 -0.3
210,455 + MPMX19_02952 0.12 +0.6
210,455 + MPMX19_02952 0.12 +0.2
210,456 - MPMX19_02952 0.12 -2.1
210,746 + MPMX19_02952 0.40 -0.4
210,746 + MPMX19_02952 0.40 +0.3
210,746 + MPMX19_02952 0.40 -0.1
210,746 + MPMX19_02952 0.40 -0.4
210,746 + MPMX19_02952 0.40 -0.7
210,747 - MPMX19_02952 0.40 -1.0
210,747 - MPMX19_02952 0.40 -0.7
210,747 - MPMX19_02952 0.40 -1.4
210,747 - MPMX19_02952 0.40 -1.7
210,747 - MPMX19_02952 0.40 +0.5
210,747 - MPMX19_02952 0.40 -0.0
210,776 + MPMX19_02952 0.43 -0.1
210,830 + MPMX19_02952 0.48 -1.0
210,830 + MPMX19_02952 0.48 +1.3
210,830 + MPMX19_02952 0.48 -1.1
210,830 + MPMX19_02952 0.48 -0.1
210,830 + MPMX19_02952 0.48 -0.5
210,830 + MPMX19_02952 0.48 -0.0
210,830 + MPMX19_02952 0.48 -0.3
210,830 + MPMX19_02952 0.48 -0.2
210,830 + MPMX19_02952 0.48 -1.0
210,830 + MPMX19_02952 0.48 +0.3
210,830 + MPMX19_02952 0.48 -2.3
210,830 + MPMX19_02952 0.48 -0.5
210,830 + MPMX19_02952 0.48 -0.4
210,830 + MPMX19_02952 0.48 -0.3
210,831 - MPMX19_02952 0.48 -0.2
210,831 - MPMX19_02952 0.48 -2.3
210,831 - MPMX19_02952 0.48 +0.1
210,831 - MPMX19_02952 0.48 -1.7
210,831 - MPMX19_02952 0.48 -1.6
210,831 - MPMX19_02952 0.48 -1.5
210,831 - MPMX19_02952 0.48 -1.8
210,831 - MPMX19_02952 0.48 -0.6
210,831 - MPMX19_02952 0.48 -1.1
210,897 - MPMX19_02952 0.54 -0.5
210,897 - MPMX19_02952 0.54 -1.6
210,950 + MPMX19_02952 0.59 -0.1
210,950 + MPMX19_02952 0.59 -0.6
210,950 + MPMX19_02952 0.59 +0.6
210,950 + MPMX19_02952 0.59 -0.6
210,950 + MPMX19_02952 0.59 -0.7
210,951 - MPMX19_02952 0.59 -1.1
210,951 - MPMX19_02952 0.59 -0.2
210,951 - MPMX19_02952 0.59 -1.2
210,971 + MPMX19_02952 0.61 -1.1
210,971 + MPMX19_02952 0.61 -1.0
210,971 + MPMX19_02952 0.61 -1.4
210,971 + MPMX19_02952 0.61 +0.0
210,972 - MPMX19_02952 0.61 -0.5
211,001 + MPMX19_02952 0.64 -1.7
211,002 - MPMX19_02952 0.64 -1.8
211,002 - MPMX19_02952 0.64 -1.8
211,133 + MPMX19_02952 0.77 +0.5
211,133 + MPMX19_02952 0.77 +0.2
211,133 + MPMX19_02952 0.77 +0.2
211,134 - MPMX19_02952 0.77 -0.6
211,134 - MPMX19_02952 0.77 -1.5
211,134 - MPMX19_02952 0.77 +0.5
211,134 - MPMX19_02952 0.77 -0.6
211,134 - MPMX19_02952 0.77 -0.0

Or see this region's nucleotide sequence