Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02011

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
2,098,023	+				-0.2
2,098,023	+				+0.2
2,098,023	+				-0.3
2,098,023	+				+0.7
2,098,023	+				-1.0
2,098,023	+				-0.6
2,098,023	+				-0.1
2,098,023	+				+0.8
2,098,023	+				+0.4
2,098,024	-				+0.2
2,098,024	-				+1.1
2,098,024	-				+0.2
2,098,024	-				-0.4
2,098,024	-				-0.5
2,098,024	-				-0.4
2,098,024	-				+2.1
2,098,024	-				-0.3
2,098,024	-				-0.8
2,098,024	-				-0.7
2,098,024	-				+0.7
2,098,024	-				-0.7
2,098,024	-				+1.7
2,098,264	+		MPMX19_02010	0.47	-1.1
2,098,264	+		MPMX19_02010	0.47	-1.3
2,098,264	+		MPMX19_02010	0.47	+1.5
2,098,264	+		MPMX19_02010	0.47	-1.6
2,098,265	-		MPMX19_02010	0.47	+1.4
2,098,265	-		MPMX19_02010	0.47	-1.0
2,098,265	-		MPMX19_02010	0.47	+0.7
2,098,265	-		MPMX19_02010	0.47	-1.8
2,098,265	-		MPMX19_02010	0.47	-0.0
2,098,288	+		MPMX19_02010	0.51	-1.3
2,098,288	+		MPMX19_02010	0.51	-1.4
2,098,288	+		MPMX19_02010	0.51	-1.4
2,098,288	+		MPMX19_02010	0.51	+0.0
2,098,288	+		MPMX19_02010	0.51	+0.3
2,098,288	+		MPMX19_02010	0.51	-0.2
2,098,288	+		MPMX19_02010	0.51	-0.6
2,098,288	+		MPMX19_02010	0.51	+0.7
2,098,288	+		MPMX19_02010	0.51	-0.3
2,098,288	+		MPMX19_02010	0.51	-0.8
2,098,288	+		MPMX19_02010	0.51	-0.5
2,098,288	+		MPMX19_02010	0.51	+0.3
2,098,288	+		MPMX19_02010	0.51	-2.1
2,098,288	+		MPMX19_02010	0.51	-0.5
2,098,288	+		MPMX19_02010	0.51	+0.0
2,098,288	+		MPMX19_02010	0.51	-0.2
2,098,288	+		MPMX19_02010	0.51	-1.5
2,098,288	+		MPMX19_02010	0.51	-1.2
2,098,288	+		MPMX19_02010	0.51	-0.2
2,098,288	+		MPMX19_02010	0.51	-0.8
2,098,288	+		MPMX19_02010	0.51	-0.1
2,098,288	+		MPMX19_02010	0.51	-0.4
2,098,288	+		MPMX19_02010	0.51	-0.1
2,098,289	-		MPMX19_02010	0.52	-0.0
2,098,289	-		MPMX19_02010	0.52	-0.6
2,098,289	-		MPMX19_02010	0.52	-1.5
2,098,289	-		MPMX19_02010	0.52	-0.2
2,098,289	-		MPMX19_02010	0.52	-0.4
2,098,289	-		MPMX19_02010	0.52	-0.3
2,098,289	-		MPMX19_02010	0.52	-0.8
2,098,289	-		MPMX19_02010	0.52	+0.3
2,098,289	-		MPMX19_02010	0.52	-0.6
2,098,289	-		MPMX19_02010	0.52	-0.1
2,098,289	-		MPMX19_02010	0.52	+0.3
2,098,289	-		MPMX19_02010	0.52	-0.6
2,098,289	-		MPMX19_02010	0.52	-0.9
2,098,289	-		MPMX19_02010	0.52	-1.4
2,098,289	-		MPMX19_02010	0.52	-0.5
2,098,289	-		MPMX19_02010	0.52	-0.4
2,098,289	-		MPMX19_02010	0.52	-1.0
2,098,289	-		MPMX19_02010	0.52	-1.0
2,098,289	-		MPMX19_02010	0.52	-0.8
2,098,289	-		MPMX19_02010	0.52	-1.8
2,098,289	-		MPMX19_02010	0.52	-0.1
2,098,289	-		MPMX19_02010	0.52	+0.5
2,098,289	-		MPMX19_02010	0.52	-0.3
2,098,289	-		MPMX19_02010	0.52	-1.7
2,098,289	-		MPMX19_02010	0.52	-1.1
2,098,289	-		MPMX19_02010	0.52	+0.3
2,098,289	-		MPMX19_02010	0.52	+0.7
2,098,289	-		MPMX19_02010	0.52	-0.9
2,098,289	-		MPMX19_02010	0.52	+0.5
2,098,289	-		MPMX19_02010	0.52	-0.2
2,098,435	+		MPMX19_02010	0.79	-0.2
2,098,435	+		MPMX19_02010	0.79	-0.1
2,098,435	+		MPMX19_02010	0.79	+0.2
2,098,436	-		MPMX19_02010	0.79	+1.1
2,098,465	+		MPMX19_02010	0.85	-0.8
2,098,465	+		MPMX19_02010	0.85	-1.0
2,098,465	+		MPMX19_02010	0.85	-0.4
2,098,465	+		MPMX19_02010	0.85	-0.4
2,098,465	+		MPMX19_02010	0.85	-1.3
2,098,465	+		MPMX19_02010	0.85	-0.3
2,098,465	+		MPMX19_02010	0.85	-1.6
2,098,465	+		MPMX19_02010	0.85	-0.5
2,098,465	+		MPMX19_02010	0.85	-0.7
2,098,466	-		MPMX19_02010	0.85	-1.5
2,098,466	-		MPMX19_02010	0.85	-0.1
2,098,466	-		MPMX19_02010	0.85	-1.9
2,098,466	-		MPMX19_02010	0.85	+0.0
2,098,471	+		MPMX19_02010	0.86	-1.4
2,098,471	+		MPMX19_02010	0.86	-0.7
2,098,471	+		MPMX19_02010	0.86	-0.6
2,098,472	-		MPMX19_02010	0.86	-0.0
2,098,472	-		MPMX19_02010	0.86	-0.0
2,098,472	-		MPMX19_02010	0.86	+1.3
2,098,477	+		MPMX19_02010	0.87	-0.7
2,098,477	+		MPMX19_02010	0.87	-1.3
2,098,477	+		MPMX19_02010	0.87	+0.6
2,098,477	+		MPMX19_02010	0.87	-1.6
2,098,477	+		MPMX19_02010	0.87	-0.2
2,098,477	+		MPMX19_02010	0.87	-0.5
2,098,477	+		MPMX19_02010	0.87	-0.5
2,098,477	+		MPMX19_02010	0.87	-0.3
2,098,477	+		MPMX19_02010	0.87	-0.1
2,098,477	+		MPMX19_02010	0.87	+0.2
2,098,477	+		MPMX19_02010	0.87	-2.5
2,098,478	-		MPMX19_02010	0.87	-0.6
2,098,478	-		MPMX19_02010	0.87	+0.3
2,098,478	-		MPMX19_02010	0.87	+0.9
2,098,478	-		MPMX19_02010	0.87	-0.8
2,098,478	-		MPMX19_02010	0.87	-1.9
2,098,478	-		MPMX19_02010	0.87	-0.8
2,098,478	-		MPMX19_02010	0.87	+0.3
2,098,478	-		MPMX19_02010	0.87	+1.7
2,098,478	-		MPMX19_02010	0.87	-1.1
2,098,478	-		MPMX19_02010	0.87	-0.7
2,098,582	+				-0.3
2,098,582	+				-0.6
2,098,582	+				-1.0
2,098,583	-				+0.9
2,098,583	-				+0.1
2,098,583	-				-0.5
2,098,639	+				+0.4
2,098,639	+				+0.6
2,098,639	+				-2.3
2,098,640	-				-1.5
2,098,650	-				-1.1
2,098,679	+				+0.3
2,098,680	-				-1.1
2,098,680	-				-1.5
2,098,782	+				-0.9
2,098,782	+				+1.9
2,098,782	+				+0.9
2,098,782	+				-0.3
2,098,783	-				-0.2
2,098,965	+		MPMX19_02011	0.21	+0.1
2,099,068	-		MPMX19_02011	0.28	-0.1
2,099,068	-		MPMX19_02011	0.28	-0.9
2,099,068	-		MPMX19_02011	0.28	-1.1
2,099,068	-		MPMX19_02011	0.28	-1.5
2,099,068	-		MPMX19_02011	0.28	+0.3
2,099,068	-		MPMX19_02011	0.28	-1.5
2,099,068	-		MPMX19_02011	0.28	-2.5
2,099,068	-		MPMX19_02011	0.28	-1.0
2,099,068	-		MPMX19_02011	0.28	-0.3
2,099,709	+		MPMX19_02011	0.75	-1.1
2,099,985	+				-2.1
2,099,986	-				+1.0
2,099,986	-				+0.4
2,099,986	-				-0.2
2,099,986	-				+1.7
2,100,051	+				-0.6
2,100,051	+				+0.1
2,100,051	+				-0.5
2,100,051	+				+0.9
2,100,051	+				-0.3
2,100,112	+				+0.5
2,100,112	+				+1.3
2,100,113	-				-0.9
2,100,113	-				-0.4
2,100,141	+				-1.8
2,100,158	-				+0.7
2,100,185	-				+0.7
2,100,185	-				+1.1
2,100,185	-				-0.3
2,100,282	+				-1.3
2,100,282	+				+0.3
2,100,283	-				-0.9
2,100,283	-				+0.3
2,100,286	+				+1.0
2,100,286	+				-0.8
2,100,286	+				+1.1
2,100,286	+				+1.0
2,100,286	+				+0.7
2,100,286	+				+0.6
2,100,286	+				-1.5
2,100,286	+				+0.1
2,100,286	+				-0.9
2,100,286	+				+0.4
2,100,287	-				-0.6
2,100,287	-				+0.0
2,100,287	-				+1.4
2,100,287	-				-1.5
2,100,287	-				+0.3
2,100,287	-				+2.3
2,100,291	+				-0.3
2,100,291	+				+0.3
2,100,292	-				-0.3
2,100,292	-				+0.5
2,100,292	-				-0.3
2,100,292	-				+0.7
2,100,292	-				-0.9
2,100,365	+				+1.2
2,100,365	+				-0.1
2,100,365	+				-0.2
2,100,365	+				-0.3
2,100,365	+				+0.7
2,100,365	+				+0.5
2,100,365	+				-0.2
2,100,365	+				+2.0
2,100,365	+				+0.4
2,100,365	+				+0.6
2,100,365	+				-1.1
2,100,365	+				-0.2
2,100,365	+				+0.6
2,100,365	+				-0.5
2,100,365	+				-1.2
2,100,366	-				-1.8
2,100,366	-				-0.2
2,100,366	-				+0.5
2,100,366	-				-1.0
2,100,366	-				-1.1
2,100,366	-				-0.6
2,100,366	-				-0.6
2,100,366	-				+0.7
2,100,366	-				-0.5
2,100,366	-				+0.4
2,100,366	-				-1.0
2,100,366	-				-0.3
2,100,366	-				-1.2
2,100,366	-				-0.6
2,100,366	-				+0.3
2,100,366	-				-0.1
2,100,366	-				+0.3
2,100,366	-				-0.3
2,100,366	-				+1.3
2,100,366	-				-0.9
2,100,366	-				-0.6
2,100,369	+				-0.6
2,100,369	+				-1.5
2,100,369	+				+0.5
2,100,369	+				+0.4
2,100,370	-				-1.8
2,100,515	+		MPMX19_02012	0.33	+0.0
2,100,515	+		MPMX19_02012	0.33	-0.1
2,100,516	-		MPMX19_02012	0.34	+0.7
2,100,698	+		MPMX19_02012	0.68	-0.3
2,100,698	+		MPMX19_02012	0.68	-0.3
2,100,698	+		MPMX19_02012	0.68	-0.8
2,100,698	+		MPMX19_02012	0.68	-0.8
2,100,698	+		MPMX19_02012	0.68	+0.1
2,100,698	+		MPMX19_02012	0.68	-1.5
2,100,698	+		MPMX19_02012	0.68	-1.0
2,100,699	-		MPMX19_02012	0.68	-0.1
2,100,699	-		MPMX19_02012	0.68	-2.1
2,100,699	-		MPMX19_02012	0.68	-0.5
2,100,699	-		MPMX19_02012	0.68	+1.5
2,100,699	-		MPMX19_02012	0.68	+0.1
2,100,699	-		MPMX19_02012	0.68	-0.5
2,100,918	+				+0.6
2,100,918	+				-1.3
2,100,919	-				-0.4
2,100,919	-				-1.6
2,100,919	-				-0.1
2,100,919	-				+0.3
2,100,933	+				-0.5
2,100,933	+				+0.7
2,100,934	-				-0.1
2,100,934	-				+0.1
2,100,934	-				+1.5
2,101,041	+		MPMX19_02013	0.12	+0.0
2,101,041	+		MPMX19_02013	0.12	-0.8
2,101,041	+		MPMX19_02013	0.12	-0.5
2,101,041	+		MPMX19_02013	0.12	-1.5
2,101,041	+		MPMX19_02013	0.12	-0.9
2,101,041	+		MPMX19_02013	0.12	+0.4
2,101,041	+		MPMX19_02013	0.12	-0.5
2,101,041	+		MPMX19_02013	0.12	+0.8
2,101,041	-		MPMX19_02013	0.12	-0.5
2,101,042	-		MPMX19_02013	0.12	+0.1
2,101,042	-		MPMX19_02013	0.12	+0.3
2,101,042	-		MPMX19_02013	0.12	-0.4
2,101,042	-		MPMX19_02013	0.12	-0.3
2,101,042	-		MPMX19_02013	0.12	-0.5
2,101,042	-		MPMX19_02013	0.12	-0.1
2,101,042	-		MPMX19_02013	0.12	-0.9
2,101,042	-		MPMX19_02013	0.12	-1.1
2,101,042	-		MPMX19_02013	0.12	+0.2
2,101,042	-		MPMX19_02013	0.12	-1.6
2,101,042	-		MPMX19_02013	0.12	-0.2