Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01999

Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
2,086,336	+		MPMX19_01998	0.43	+0.1
2,086,336	+		MPMX19_01998	0.43	-0.9
2,086,336	+		MPMX19_01998	0.43	-1.6
2,086,337	-		MPMX19_01998	0.43	+0.1
2,086,337	-		MPMX19_01998	0.43	-0.3
2,086,337	-		MPMX19_01998	0.43	+0.3
2,086,337	-		MPMX19_01998	0.43	+0.1
2,086,337	-		MPMX19_01998	0.43	-0.9
2,086,465	+		MPMX19_01998	0.52	+0.1
2,086,465	+		MPMX19_01998	0.52	+1.3
2,086,466	-		MPMX19_01998	0.52	-0.3
2,086,466	-		MPMX19_01998	0.52	-0.5
2,086,466	-		MPMX19_01998	0.52	-0.9
2,086,466	-		MPMX19_01998	0.52	-0.8
2,086,466	-		MPMX19_01998	0.52	-0.6
2,086,522	+		MPMX19_01998	0.56	-1.9
2,086,558	+		MPMX19_01998	0.59	-1.5
2,086,558	+		MPMX19_01998	0.59	-0.0
2,086,558	+		MPMX19_01998	0.59	+0.7
2,086,558	+		MPMX19_01998	0.59	-0.8
2,086,559	-		MPMX19_01998	0.59	+0.1
2,086,559	-		MPMX19_01998	0.59	+0.1
2,086,559	-		MPMX19_01998	0.59	+1.1
2,086,559	-		MPMX19_01998	0.59	-0.7
2,086,559	-		MPMX19_01998	0.59	-2.8
2,086,714	+		MPMX19_01998	0.70	-0.5
2,086,714	+		MPMX19_01998	0.70	+1.4
2,086,714	+		MPMX19_01998	0.70	-2.1
2,086,714	+		MPMX19_01998	0.70	-2.8
2,086,714	+		MPMX19_01998	0.70	-0.6
2,086,714	+		MPMX19_01998	0.70	-0.9
2,086,714	+		MPMX19_01998	0.70	+1.0
2,086,714	+		MPMX19_01998	0.70	+1.3
2,086,714	+		MPMX19_01998	0.70	-0.7
2,086,714	+		MPMX19_01998	0.70	-0.6
2,086,714	+		MPMX19_01998	0.70	+0.9
2,086,714	+		MPMX19_01998	0.70	+0.2
2,086,714	+		MPMX19_01998	0.70	-0.1
2,086,715	-		MPMX19_01998	0.70	+0.1
2,086,715	-		MPMX19_01998	0.70	-0.4
2,086,715	-		MPMX19_01998	0.70	+0.4
2,086,715	-		MPMX19_01998	0.70	-0.3
2,086,715	-		MPMX19_01998	0.70	+2.0
2,086,715	-		MPMX19_01998	0.70	-0.5
2,087,010	+				-1.1
2,087,010	+				-0.0
2,087,010	+				-0.8
2,087,010	+				+0.5
2,087,137	+				+0.3
2,087,137	+				-0.2
2,087,137	+				-0.0
2,087,137	+				+0.1
2,087,137	+				+0.6
2,087,137	+				-0.9
2,087,137	+				+0.1
2,087,137	+				-0.7
2,087,137	+				+0.4
2,087,138	-				-0.4
2,087,138	-				-0.4
2,087,138	-				-0.0
2,087,138	-				-0.5
2,087,138	-				+1.1
2,087,203	+				+1.1
2,087,203	+				+1.1
2,087,203	+				-1.2
2,087,248	+				+1.0
2,087,248	+				+0.7
2,087,248	+				-0.6
2,087,248	+				-0.2
2,087,248	+				+0.1
2,087,249	-				+0.5
2,087,293	+				-1.6
2,087,293	+				+0.0
2,087,293	+				+0.5
2,087,293	+				-0.5
2,087,294	-				-1.1
2,087,294	-				+0.4
2,087,294	-				-1.0
2,087,294	-				+0.7
2,087,294	-				-1.1
2,087,294	-				+0.4
2,087,294	-				-0.8
2,087,308	+				-0.4
2,087,308	+				+1.2
2,087,308	+				-1.5
2,087,309	-				-0.2
2,087,309	-				+0.7
2,087,309	-				-0.0
2,087,309	-				-0.1
2,087,422	+		MPMX19_01999	0.17	+0.2
2,087,422	+		MPMX19_01999	0.17	+0.7
2,087,449	+		MPMX19_01999	0.19	-0.4
2,087,450	-		MPMX19_01999	0.19	-0.1
2,087,452	+		MPMX19_01999	0.19	+0.0
2,087,452	+		MPMX19_01999	0.19	+1.4
2,087,452	+		MPMX19_01999	0.19	-0.9
2,087,452	+		MPMX19_01999	0.19	-0.3
2,087,452	+		MPMX19_01999	0.19	+1.0
2,087,452	+		MPMX19_01999	0.19	+0.2
2,087,453	-		MPMX19_01999	0.19	-0.6
2,087,453	-		MPMX19_01999	0.19	+0.1
2,087,453	-		MPMX19_01999	0.19	+0.1
2,087,453	-		MPMX19_01999	0.19	+0.7
2,087,453	-		MPMX19_01999	0.19	-0.8
2,087,453	-		MPMX19_01999	0.19	-2.0
2,087,626	+		MPMX19_01999	0.32	-0.8
2,087,627	-		MPMX19_01999	0.32	-0.9
2,087,707	+		MPMX19_01999	0.39	-0.1
2,087,708	-		MPMX19_01999	0.39	-1.4
2,087,708	-		MPMX19_01999	0.39	-1.6
2,087,708	-		MPMX19_01999	0.39	-0.9
2,087,776	+		MPMX19_01999	0.44	-0.9
2,087,777	-		MPMX19_01999	0.44	+0.1
2,087,777	-		MPMX19_01999	0.44	-0.9
2,087,777	-		MPMX19_01999	0.44	-0.5
2,087,777	-		MPMX19_01999	0.44	-1.1
2,088,031	+		MPMX19_01999	0.63	-0.8
2,088,031	+		MPMX19_01999	0.63	-0.7
2,088,031	+		MPMX19_01999	0.63	-1.3
2,088,031	+		MPMX19_01999	0.63	-0.0
2,088,032	-		MPMX19_01999	0.63	-1.1
2,088,032	-		MPMX19_01999	0.63	+0.1
2,088,032	-		MPMX19_01999	0.63	-0.0
2,088,032	-		MPMX19_01999	0.63	-0.4
2,088,032	-		MPMX19_01999	0.63	-1.1
2,088,032	-		MPMX19_01999	0.63	-0.8
2,088,043	+		MPMX19_01999	0.64	-1.0
2,088,044	-		MPMX19_01999	0.64	-0.9
2,088,064	+		MPMX19_01999	0.66	-0.6
2,088,064	+		MPMX19_01999	0.66	-2.7
2,088,064	+		MPMX19_01999	0.66	-0.4
2,088,065	-		MPMX19_01999	0.66	-0.0
2,088,065	-		MPMX19_01999	0.66	-1.6
2,088,065	-		MPMX19_01999	0.66	+1.4
2,088,065	-		MPMX19_01999	0.66	-1.8
2,088,337	+		MPMX19_01999	0.87	-0.8
2,088,337	+		MPMX19_01999	0.87	-0.7
2,088,338	-		MPMX19_01999	0.87	+0.4
2,088,370	+		MPMX19_01999	0.89	+0.6
2,088,370	+		MPMX19_01999	0.89	-0.5
2,088,370	+		MPMX19_01999	0.89	-0.3
2,088,370	+		MPMX19_01999	0.89	-0.2
2,088,371	-		MPMX19_01999	0.89	-0.7
2,088,371	-		MPMX19_01999	0.89	-2.7
2,088,371	-		MPMX19_01999	0.89	-1.3
2,088,371	-		MPMX19_01999	0.89	-0.4
2,088,371	-		MPMX19_01999	0.89	+0.1
2,088,371	-		MPMX19_01999	0.89	-0.6
2,088,371	-		MPMX19_01999	0.89	+0.6
2,088,612	+				-0.6
2,088,612	+				-1.2
2,088,612	+				-0.5
2,088,612	+				-0.3
2,088,612	+				-0.3
2,088,612	+				-0.3
2,088,612	+				-0.3
2,088,612	+				+0.3
2,088,612	+				+0.3
2,088,612	+				-0.6
2,088,612	+				-0.6
2,088,612	+				+0.3
2,088,612	+				-2.1
2,088,612	+				+0.0
2,088,612	+				-0.6
2,088,612	+				-0.1
2,088,612	+				-0.7
2,088,612	+				-0.6
2,088,612	+				-0.6
2,088,613	-				-0.7
2,088,613	-				-2.5
2,088,613	-				-0.3
2,088,613	-				+0.7
2,088,613	-				-0.2
2,088,613	-				+0.1
2,088,613	-				+0.7
2,088,613	-				+0.1
2,088,613	-				+0.1
2,088,613	-				+2.4
2,088,613	-				-0.7
2,088,613	-				-1.3
2,088,613	-				-2.3
2,088,777	+		MPMX19_02000	0.17	+1.0
2,088,777	+		MPMX19_02000	0.17	-2.5
2,088,777	+		MPMX19_02000	0.17	-1.6
2,088,777	+		MPMX19_02000	0.17	-1.6
2,088,777	+		MPMX19_02000	0.17	-1.6
2,088,777	+		MPMX19_02000	0.17	+0.2
2,088,777	+		MPMX19_02000	0.17	+1.0
2,088,777	+		MPMX19_02000	0.17	-0.1
2,088,777	+		MPMX19_02000	0.17	+0.4
2,088,777	+		MPMX19_02000	0.17	-0.9
2,088,777	+		MPMX19_02000	0.17	-0.5
2,088,777	+		MPMX19_02000	0.17	-0.5
2,088,778	-		MPMX19_02000	0.18	-0.3
2,088,778	-		MPMX19_02000	0.18	+0.4
2,088,778	-		MPMX19_02000	0.18	-1.2
2,088,778	-		MPMX19_02000	0.18	-0.8
2,088,778	-		MPMX19_02000	0.18	-0.5
2,088,778	-		MPMX19_02000	0.18	+0.7
2,088,778	-		MPMX19_02000	0.18	-0.3
2,088,778	-		MPMX19_02000	0.18	+0.7
2,089,149	+		MPMX19_02000	0.54	+0.1
2,089,149	+		MPMX19_02000	0.54	+0.7
2,089,149	+		MPMX19_02000	0.54	+1.1
2,089,149	+		MPMX19_02000	0.54	-1.6
2,089,149	+		MPMX19_02000	0.54	-0.3
2,089,149	+		MPMX19_02000	0.54	+0.3
2,089,150	-		MPMX19_02000	0.54	-1.4
2,089,150	-		MPMX19_02000	0.54	-1.1
2,089,150	-		MPMX19_02000	0.54	-0.1
2,089,150	-		MPMX19_02000	0.54	-0.3
2,089,150	-		MPMX19_02000	0.54	-0.9
2,089,150	-		MPMX19_02000	0.54	-1.4
2,089,150	-		MPMX19_02000	0.54	-0.2
2,089,479	+		MPMX19_02000	0.86	-0.0
2,089,479	+		MPMX19_02000	0.86	-0.1
2,089,479	+		MPMX19_02000	0.86	+0.4
2,089,479	+		MPMX19_02000	0.86	-0.3
2,089,480	-		MPMX19_02000	0.86	-1.3
2,089,480	-		MPMX19_02000	0.86	-0.4
2,089,480	-		MPMX19_02000	0.86	-1.8
2,089,480	-		MPMX19_02000	0.86	-1.1
2,089,480	-		MPMX19_02000	0.86	+0.3
2,089,480	-		MPMX19_02000	0.86	+0.3
2,089,480	-		MPMX19_02000	0.86	-0.5
2,089,480	-		MPMX19_02000	0.86	+1.3
2,089,480	-		MPMX19_02000	0.86	-0.8