Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00844 and MPMX19_00845 are separated by 93 nucleotides MPMX19_00845 and MPMX19_00846 are separated by 510 nucleotides MPMX19_00846 and MPMX19_00847 are separated by 166 nucleotides
MPMX19_00844: MPMX19_00844 - GTPase Era, at 875,547 to 876,731
_00844
MPMX19_00845: MPMX19_00845 - hypothetical protein, at 876,825 to 877,130
_00845
MPMX19_00846: MPMX19_00846 - hypothetical protein, at 877,641 to 877,934
_00846
MPMX19_00847: MPMX19_00847 - Ribosomal RNA large subunit methyltransferase M, at 878,101 to 879,126
_00847
Position (kb) 877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 876.696 kb on + strand at 876.697 kb on - strand at 876.697 kb on - strand at 876.938 kb on + strand, within MPMX19_00845 at 876.939 kb on - strand, within MPMX19_00845 at 876.939 kb on - strand, within MPMX19_00845 at 877.203 kb on + strand at 877.204 kb on - strand at 877.204 kb on - strand at 877.204 kb on - strand at 877.204 kb on - strand at 877.306 kb on + strand at 877.306 kb on + strand at 877.306 kb on + strand at 877.307 kb on - strand at 877.307 kb on - strand at 877.440 kb on + strand at 877.440 kb on + strand at 877.440 kb on + strand at 877.441 kb on - strand at 877.441 kb on - strand at 877.527 kb on - strand at 877.527 kb on - strand at 877.566 kb on + strand at 877.566 kb on + strand at 877.567 kb on - strand at 877.567 kb on - strand at 877.567 kb on - strand at 877.576 kb on - strand at 877.599 kb on + strand at 877.600 kb on - strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.622 kb on + strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.623 kb on - strand at 877.660 kb on + strand at 877.660 kb on + strand at 877.661 kb on - strand at 877.661 kb on - strand at 877.661 kb on - strand at 877.901 kb on + strand, within MPMX19_00846 at 877.901 kb on + strand, within MPMX19_00846 at 877.901 kb on + strand, within MPMX19_00846 at 877.902 kb on - strand, within MPMX19_00846 at 877.902 kb on - strand, within MPMX19_00846 at 877.902 kb on - strand, within MPMX19_00846 at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.930 kb on + strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.931 kb on - strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.934 kb on + strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.935 kb on - strand at 877.984 kb on + strand at 877.984 kb on + strand at 877.985 kb on - strand at 877.985 kb on - strand at 877.985 kb on - strand at 877.985 kb on - strand at 878.034 kb on + strand at 878.034 kb on + strand at 878.035 kb on - strand at 878.035 kb on - strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.036 kb on + strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.037 kb on - strand at 878.130 kb on + strand at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.242 kb on + strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.243 kb on - strand, within MPMX19_00847 at 878.368 kb on + strand, within MPMX19_00847 at 878.368 kb on + strand, within MPMX19_00847 at 878.368 kb on + strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.369 kb on - strand, within MPMX19_00847 at 878.671 kb on + strand, within MPMX19_00847 at 878.672 kb on - strand, within MPMX19_00847 at 878.672 kb on - strand, within MPMX19_00847 at 878.672 kb on - strand, within MPMX19_00847
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 876,696 + -0.4 876,697 - -1.0 876,697 - -1.4 876,938 + MPMX19_00845 0.37 -2.1 876,939 - MPMX19_00845 0.37 -1.4 876,939 - MPMX19_00845 0.37 +1.1 877,203 + -1.3 877,204 - +1.4 877,204 - -0.9 877,204 - +0.4 877,204 - +0.2 877,306 + +0.8 877,306 + -0.8 877,306 + -0.7 877,307 - +1.6 877,307 - -1.7 877,440 + -0.7 877,440 + -0.4 877,440 + -1.7 877,441 - -0.9 877,441 - +1.1 877,527 - -1.7 877,527 - -0.1 877,566 + +0.3 877,566 + +0.6 877,567 - -1.0 877,567 - +1.2 877,567 - -0.3 877,576 - +0.4 877,599 + +1.2 877,600 - -1.0 877,622 + -1.3 877,622 + -0.1 877,622 + +0.3 877,622 + -0.6 877,622 + -0.1 877,622 + +0.1 877,622 + +0.2 877,623 - +0.4 877,623 - +0.0 877,623 - +0.0 877,623 - -0.4 877,660 + +0.8 877,660 + +0.2 877,661 - +0.4 877,661 - -1.7 877,661 - -0.7 877,901 + MPMX19_00846 0.88 -0.7 877,901 + MPMX19_00846 0.88 -0.8 877,901 + MPMX19_00846 0.88 -1.0 877,902 - MPMX19_00846 0.89 -1.3 877,902 - MPMX19_00846 0.89 -0.8 877,902 - MPMX19_00846 0.89 +1.2 877,930 + -2.1 877,930 + +0.2 877,930 + -0.1 877,930 + -0.2 877,930 + -1.0 877,930 + -1.2 877,930 + -0.6 877,930 + -0.6 877,930 + -0.3 877,930 + -1.0 877,930 + -0.4 877,930 + -2.5 877,930 + -0.8 877,930 + -0.7 877,930 + -1.0 877,930 + +0.0 877,930 + -1.2 877,930 + -0.6 877,930 + -1.1 877,930 + -0.4 877,930 + -1.6 877,930 + -0.4 877,930 + +1.8 877,930 + -0.8 877,930 + -0.6 877,931 - -1.6 877,931 - -1.0 877,931 - -1.8 877,931 - -2.0 877,931 - +0.6 877,931 - -0.4 877,931 - -1.4 877,931 - -0.6 877,931 - +0.3 877,931 - +0.4 877,931 - -1.2 877,931 - -0.7 877,931 - +0.4 877,931 - -0.6 877,931 - +1.8 877,931 - +0.6 877,931 - -0.1 877,931 - +0.0 877,931 - -1.2 877,931 - -1.2 877,931 - -0.6 877,931 - +1.3 877,931 - +0.6 877,931 - -0.6 877,931 - +0.0 877,931 - -0.4 877,931 - +0.4 877,931 - +0.6 877,931 - -0.4 877,931 - -0.7 877,934 + -1.8 877,934 + -0.8 877,934 + -2.6 877,934 + +0.4 877,934 + +0.5 877,934 + -0.6 877,934 + -1.8 877,934 + -1.7 877,934 + -1.1 877,934 + +0.2 877,934 + -1.7 877,934 + -1.2 877,934 + -0.2 877,934 + -0.6 877,934 + -1.4 877,934 + +0.1 877,934 + +1.2 877,934 + +0.0 877,934 + -0.7 877,934 + -1.6 877,934 + +0.0 877,934 + -2.4 877,934 + -0.5 877,934 + -0.7 877,934 + -1.6 877,935 - -0.9 877,935 - -0.0 877,935 - -0.2 877,935 - +0.6 877,935 - -0.7 877,935 - +0.4 877,935 - +0.7 877,935 - -1.5 877,935 - +0.3 877,935 - -0.4 877,935 - +0.0 877,935 - +1.6 877,935 - -0.4 877,935 - -2.4 877,984 + +0.4 877,984 + -1.0 877,985 - -1.2 877,985 - +0.2 877,985 - -2.2 877,985 - +0.4 878,034 + +0.9 878,034 + -1.6 878,035 - -3.0 878,035 - -1.4 878,036 + -0.5 878,036 + -0.7 878,036 + -0.8 878,036 + -0.9 878,036 + -1.6 878,036 + +0.3 878,036 + -1.6 878,036 + -0.3 878,036 + -1.6 878,037 - +0.9 878,037 - -0.8 878,037 - +1.4 878,037 - -1.0 878,037 - +0.1 878,037 - -1.1 878,037 - -0.5 878,037 - +0.8 878,037 - +0.2 878,130 + +0.6 878,242 + MPMX19_00847 0.14 -0.1 878,242 + MPMX19_00847 0.14 +0.6 878,242 + MPMX19_00847 0.14 +0.6 878,242 + MPMX19_00847 0.14 -0.6 878,242 + MPMX19_00847 0.14 +0.0 878,242 + MPMX19_00847 0.14 +1.0 878,242 + MPMX19_00847 0.14 -0.7 878,242 + MPMX19_00847 0.14 -1.3 878,242 + MPMX19_00847 0.14 -0.4 878,242 + MPMX19_00847 0.14 +0.5 878,242 + MPMX19_00847 0.14 -0.1 878,242 + MPMX19_00847 0.14 -0.6 878,242 + MPMX19_00847 0.14 -0.7 878,243 - MPMX19_00847 0.14 -1.4 878,243 - MPMX19_00847 0.14 +0.3 878,243 - MPMX19_00847 0.14 +1.1 878,243 - MPMX19_00847 0.14 -0.2 878,243 - MPMX19_00847 0.14 +2.2 878,243 - MPMX19_00847 0.14 +0.2 878,243 - MPMX19_00847 0.14 +0.5 878,243 - MPMX19_00847 0.14 +0.9 878,243 - MPMX19_00847 0.14 -0.1 878,243 - MPMX19_00847 0.14 +1.6 878,243 - MPMX19_00847 0.14 +0.4 878,243 - MPMX19_00847 0.14 +0.0 878,243 - MPMX19_00847 0.14 -0.2 878,243 - MPMX19_00847 0.14 +0.1 878,243 - MPMX19_00847 0.14 +0.8 878,243 - MPMX19_00847 0.14 -0.7 878,243 - MPMX19_00847 0.14 -0.4 878,243 - MPMX19_00847 0.14 -0.7 878,243 - MPMX19_00847 0.14 -0.8 878,243 - MPMX19_00847 0.14 -0.4 878,368 + MPMX19_00847 0.26 +0.0 878,368 + MPMX19_00847 0.26 -2.1 878,368 + MPMX19_00847 0.26 +0.0 878,369 - MPMX19_00847 0.26 -0.9 878,369 - MPMX19_00847 0.26 -0.7 878,369 - MPMX19_00847 0.26 -0.1 878,369 - MPMX19_00847 0.26 -0.8 878,369 - MPMX19_00847 0.26 -2.6 878,671 + MPMX19_00847 0.56 +0.3 878,672 - MPMX19_00847 0.56 -2.0 878,672 - MPMX19_00847 0.56 +1.1 878,672 - MPMX19_00847 0.56 -1.4
Or see this region's nucleotide sequence