Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00725 and MPMX19_00726 are separated by 585 nucleotides MPMX19_00726 and MPMX19_00727 are separated by 188 nucleotides
MPMX19_00725: MPMX19_00725 - Transcriptional regulatory protein ros, at 746,869 to 747,312
_00725
MPMX19_00726: MPMX19_00726 - Putative sugar phosphate isomerase YwlF, at 747,898 to 748,335
_00726
MPMX19_00727: MPMX19_00727 - Serine hydroxymethyltransferase 2, at 748,524 to 749,825
_00727
Position (kb) 747
748
749 Strain fitness (log2 ratio) -2
-1
0
1 at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 747.023 kb on + strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.086 kb on + strand, within MPMX19_00725 at 747.086 kb on + strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.182 kb on + strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.189 kb on + strand, within MPMX19_00725 at 747.189 kb on - strand, within MPMX19_00725 at 747.190 kb on - strand, within MPMX19_00725 at 747.190 kb on - strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.287 kb on - strand at 747.359 kb on + strand at 747.360 kb on - strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.381 kb on + strand at 747.381 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.491 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.506 kb on - strand at 747.506 kb on - strand at 747.645 kb on + strand at 747.645 kb on + strand at 747.645 kb on + strand at 747.646 kb on - strand at 747.646 kb on - strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.854 kb on + strand at 747.854 kb on + strand at 747.854 kb on + strand at 747.854 kb on + strand at 748.378 kb on + strand at 748.378 kb on + strand at 748.378 kb on + strand at 748.378 kb on + strand at 748.378 kb on + strand at 748.378 kb on + strand at 748.378 kb on + strand at 748.378 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 746,951 + MPMX19_00725 0.18 +0.1 746,951 + MPMX19_00725 0.18 -1.7 746,951 + MPMX19_00725 0.18 +0.1 746,951 + MPMX19_00725 0.18 -1.0 746,952 - MPMX19_00725 0.19 +1.1 746,952 - MPMX19_00725 0.19 +0.5 746,952 - MPMX19_00725 0.19 -2.0 746,952 - MPMX19_00725 0.19 +0.9 747,023 + MPMX19_00725 0.35 +0.8 747,024 - MPMX19_00725 0.35 -1.7 747,024 - MPMX19_00725 0.35 -1.3 747,024 - MPMX19_00725 0.35 +0.7 747,024 - MPMX19_00725 0.35 -1.0 747,024 - MPMX19_00725 0.35 -1.5 747,086 + MPMX19_00725 0.49 +0.7 747,086 + MPMX19_00725 0.49 -0.0 747,087 - MPMX19_00725 0.49 -0.2 747,087 - MPMX19_00725 0.49 -0.9 747,087 - MPMX19_00725 0.49 -0.9 747,087 - MPMX19_00725 0.49 -0.7 747,182 + MPMX19_00725 0.70 +0.7 747,183 - MPMX19_00725 0.71 +0.7 747,183 - MPMX19_00725 0.71 +0.2 747,183 - MPMX19_00725 0.71 -0.5 747,183 - MPMX19_00725 0.71 +1.1 747,189 + MPMX19_00725 0.72 -0.8 747,189 - MPMX19_00725 0.72 -0.2 747,190 - MPMX19_00725 0.72 +0.9 747,190 - MPMX19_00725 0.72 +1.0 747,239 + MPMX19_00725 0.83 -1.9 747,239 + MPMX19_00725 0.83 +0.1 747,239 + MPMX19_00725 0.83 +0.5 747,239 + MPMX19_00725 0.83 +0.3 747,239 + MPMX19_00725 0.83 +0.5 747,239 + MPMX19_00725 0.83 -0.1 747,240 - MPMX19_00725 0.84 +0.1 747,240 - MPMX19_00725 0.84 -0.2 747,240 - MPMX19_00725 0.84 +0.2 747,240 - MPMX19_00725 0.84 -1.8 747,240 - MPMX19_00725 0.84 -0.7 747,240 - MPMX19_00725 0.84 +0.7 747,240 - MPMX19_00725 0.84 -0.8 747,240 - MPMX19_00725 0.84 +1.1 747,287 - -0.7 747,359 + -2.0 747,360 - -0.7 747,379 + -0.3 747,379 + +0.7 747,379 + -1.0 747,379 + -0.8 747,380 - -1.4 747,380 - -1.0 747,380 - +1.7 747,380 - -0.3 747,380 - -1.5 747,381 + +0.5 747,381 + -1.3 747,402 + +0.3 747,402 + -0.3 747,402 + -1.1 747,402 + +0.5 747,402 + -0.7 747,403 - -1.7 747,403 - -0.6 747,403 - -2.1 747,403 - -0.9 747,491 + -0.0 747,502 + -0.3 747,502 + -0.4 747,502 + +0.4 747,502 + -1.4 747,502 + -1.1 747,502 + -0.4 747,502 + -0.6 747,502 + -1.8 747,503 - -0.9 747,503 - -0.7 747,503 - +0.1 747,503 - -1.8 747,503 - +0.7 747,503 - +0.7 747,503 - -0.3 747,503 - +1.1 747,503 - -0.1 747,503 - -0.1 747,506 - +0.9 747,506 - +0.7 747,645 + +0.0 747,645 + +0.1 747,645 + -0.9 747,646 - -0.1 747,646 - -1.0 747,734 + +0.1 747,734 + +0.3 747,734 + -1.0 747,734 + -0.5 747,734 + +0.7 747,734 + +0.8 747,734 + -1.1 747,734 + -1.2 747,734 + -0.8 747,734 + +0.1 747,734 + -0.3 747,734 + +0.3 747,734 + -0.6 747,735 - -0.4 747,735 - -1.9 747,735 - +0.1 747,735 - -0.1 747,735 - -0.9 747,735 - -1.0 747,735 - -0.6 747,735 - +0.3 747,735 - -0.1 747,735 - +0.9 747,738 + +0.1 747,738 + -0.1 747,738 + +1.7 747,738 + +0.3 747,738 + -1.0 747,738 + -0.4 747,738 + -2.0 747,738 + -0.7 747,738 + -0.8 747,738 + +0.5 747,738 + +0.3 747,738 + -1.1 747,738 + -0.3 747,738 + -0.1 747,738 + -0.8 747,738 + -0.8 747,738 + +0.1 747,738 + -1.2 747,738 + -0.9 747,738 + +0.2 747,738 + -0.8 747,738 + +0.9 747,738 + +0.2 747,738 + +0.3 747,738 + -0.9 747,738 + -1.9 747,738 + +0.5 747,738 + -0.1 747,738 + +1.0 747,738 + +1.0 747,738 + -1.3 747,738 + -0.6 747,738 + -1.0 747,738 + -0.5 747,738 + -0.8 747,739 - -1.3 747,739 - -0.9 747,739 - -0.9 747,739 - -0.6 747,739 - +1.4 747,739 - +0.5 747,739 - -0.1 747,739 - +0.1 747,739 - -0.2 747,739 - -1.4 747,739 - -0.5 747,739 - -1.0 747,739 - -0.1 747,739 - +0.5 747,739 - -1.2 747,739 - -0.3 747,739 - -0.8 747,739 - -0.3 747,739 - +0.2 747,739 - +0.4 747,739 - -0.3 747,739 - -1.2 747,854 + -0.4 747,854 + +0.7 747,854 + -1.2 747,854 + -0.3 748,378 + -0.5 748,378 + -0.3 748,378 + -1.5 748,378 + +0.2 748,378 + -2.3 748,378 + -1.2 748,378 + -0.2 748,378 + -1.7
Or see this region's nucleotide sequence