Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00554 and MPMX19_00555 are separated by 161 nucleotides MPMX19_00555 and MPMX19_00556 overlap by 4 nucleotides MPMX19_00556 and MPMX19_00557 are separated by 94 nucleotides MPMX19_00557 and MPMX19_00558 are separated by 78 nucleotides
MPMX19_00554: MPMX19_00554 - 4,5-DOPA dioxygenase extradiol, at 569,656 to 570,459
_00554
MPMX19_00555: MPMX19_00555 - ATP synthase subunit b, at 570,621 to 571,100
_00555
MPMX19_00556: MPMX19_00556 - ATP synthase subunit b, at 571,097 to 571,747
_00556
MPMX19_00557: MPMX19_00557 - ATP synthase subunit c, at 571,842 to 572,066
_00557
MPMX19_00558: MPMX19_00558 - ATP synthase subunit a, at 572,145 to 572,888
_00558
Position (kb) 571
572 Strain fitness (log2 ratio) -2
-1
0
1 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.104 kb on + strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.105 kb on - strand, within MPMX19_00554 at 570.218 kb on + strand, within MPMX19_00554 at 570.218 kb on + strand, within MPMX19_00554 at 570.219 kb on - strand, within MPMX19_00554 at 570.251 kb on + strand, within MPMX19_00554 at 570.252 kb on - strand, within MPMX19_00554 at 570.252 kb on - strand, within MPMX19_00554 at 570.252 kb on - strand, within MPMX19_00554 at 572.120 kb on - strand at 572.120 kb on - strand at 572.120 kb on - strand at 572.147 kb on - strand at 572.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 570,104 + MPMX19_00554 0.56 +0.5 570,104 + MPMX19_00554 0.56 -0.1 570,104 + MPMX19_00554 0.56 -1.9 570,104 + MPMX19_00554 0.56 -2.2 570,104 + MPMX19_00554 0.56 -1.2 570,104 + MPMX19_00554 0.56 -0.7 570,104 + MPMX19_00554 0.56 -0.0 570,105 - MPMX19_00554 0.56 -0.6 570,105 - MPMX19_00554 0.56 +0.8 570,105 - MPMX19_00554 0.56 +0.1 570,105 - MPMX19_00554 0.56 -0.2 570,105 - MPMX19_00554 0.56 +0.3 570,105 - MPMX19_00554 0.56 +1.1 570,105 - MPMX19_00554 0.56 +0.4 570,105 - MPMX19_00554 0.56 -0.9 570,105 - MPMX19_00554 0.56 -0.2 570,218 + MPMX19_00554 0.70 +0.3 570,218 + MPMX19_00554 0.70 -0.1 570,219 - MPMX19_00554 0.70 -1.9 570,251 + MPMX19_00554 0.74 +0.8 570,252 - MPMX19_00554 0.74 -1.2 570,252 - MPMX19_00554 0.74 +0.1 570,252 - MPMX19_00554 0.74 +0.2 572,120 - -0.7 572,120 - -0.1 572,120 - +0.7 572,147 - +0.3 572,147 - -0.6
Or see this region's nucleotide sequence