Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00539 and MPMX19_00540 are separated by 173 nucleotides MPMX19_00540 and MPMX19_00541 are separated by 115 nucleotides MPMX19_00541 and MPMX19_00542 are separated by 86 nucleotides
MPMX19_00539: MPMX19_00539 - Ion-translocating oxidoreductase complex subunit B, at 553,908 to 555,962
_00539
MPMX19_00540: MPMX19_00540 - Tungstate-binding protein TupA, at 556,136 to 556,984
_00540
MPMX19_00541: MPMX19_00541 - Tungstate uptake system permease protein TupB, at 557,100 to 557,801
_00541
MPMX19_00542: MPMX19_00542 - Sulfur carrier protein FdhD, at 557,888 to 558,769
_00542
Position (kb) 556
557 Strain fitness (log2 ratio) -2
-1
0
1 at 555.247 kb on + strand, within MPMX19_00539 at 555.247 kb on + strand, within MPMX19_00539 at 555.247 kb on + strand, within MPMX19_00539 at 555.248 kb on - strand, within MPMX19_00539 at 555.248 kb on - strand, within MPMX19_00539 at 555.248 kb on - strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.385 kb on + strand, within MPMX19_00539 at 555.386 kb on - strand, within MPMX19_00539 at 555.386 kb on - strand, within MPMX19_00539 at 555.386 kb on - strand, within MPMX19_00539 at 555.386 kb on - strand, within MPMX19_00539 at 555.386 kb on - strand, within MPMX19_00539 at 555.386 kb on - strand, within MPMX19_00539 at 555.568 kb on + strand, within MPMX19_00539 at 555.568 kb on + strand, within MPMX19_00539 at 555.568 kb on + strand, within MPMX19_00539 at 555.568 kb on + strand, within MPMX19_00539 at 555.568 kb on + strand, within MPMX19_00539 at 555.568 kb on + strand, within MPMX19_00539 at 555.568 kb on + strand, within MPMX19_00539 at 555.568 kb on + strand, within MPMX19_00539 at 555.569 kb on - strand, within MPMX19_00539 at 555.569 kb on - strand, within MPMX19_00539 at 555.569 kb on - strand, within MPMX19_00539 at 555.569 kb on - strand, within MPMX19_00539 at 555.569 kb on - strand, within MPMX19_00539 at 555.569 kb on - strand, within MPMX19_00539 at 555.569 kb on - strand, within MPMX19_00539 at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.017 kb on + strand at 556.018 kb on - strand at 556.018 kb on - strand at 556.018 kb on - strand at 556.018 kb on - strand at 556.018 kb on - strand at 556.018 kb on - strand at 556.018 kb on - strand at 556.018 kb on - strand at 556.137 kb on + strand at 556.137 kb on + strand at 556.137 kb on + strand at 556.137 kb on + strand at 556.137 kb on + strand at 556.137 kb on + strand at 556.137 kb on + strand at 556.137 kb on + strand at 556.137 kb on + strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.138 kb on - strand at 556.191 kb on + strand at 556.191 kb on + strand at 556.191 kb on + strand at 556.192 kb on - strand at 556.302 kb on + strand, within MPMX19_00540 at 556.302 kb on + strand, within MPMX19_00540 at 556.302 kb on + strand, within MPMX19_00540 at 556.302 kb on + strand, within MPMX19_00540 at 556.303 kb on - strand, within MPMX19_00540 at 556.303 kb on - strand, within MPMX19_00540 at 556.303 kb on - strand, within MPMX19_00540 at 556.395 kb on + strand, within MPMX19_00540 at 556.395 kb on + strand, within MPMX19_00540 at 556.395 kb on + strand, within MPMX19_00540 at 556.395 kb on + strand, within MPMX19_00540 at 556.396 kb on - strand, within MPMX19_00540 at 556.396 kb on - strand, within MPMX19_00540 at 556.455 kb on + strand, within MPMX19_00540 at 556.456 kb on - strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.656 kb on + strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 556.657 kb on - strand, within MPMX19_00540 at 557.023 kb on + strand at 557.023 kb on + strand at 557.024 kb on - strand at 557.024 kb on - strand at 557.024 kb on - strand at 557.024 kb on - strand at 557.413 kb on + strand, within MPMX19_00541 at 557.413 kb on + strand, within MPMX19_00541 at 557.413 kb on + strand, within MPMX19_00541 at 557.413 kb on + strand, within MPMX19_00541 at 557.414 kb on - strand, within MPMX19_00541 at 557.414 kb on - strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.557 kb on + strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.558 kb on - strand, within MPMX19_00541 at 557.824 kb on + strand at 557.824 kb on + strand at 557.825 kb on - strand at 557.910 kb on + strand at 557.910 kb on + strand at 557.910 kb on + strand at 557.911 kb on - strand at 557.911 kb on - strand at 557.911 kb on - strand at 557.911 kb on - strand at 557.911 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 555,247 + MPMX19_00539 0.65 -0.4 555,247 + MPMX19_00539 0.65 +1.2 555,247 + MPMX19_00539 0.65 -1.6 555,248 - MPMX19_00539 0.65 -2.0 555,248 - MPMX19_00539 0.65 -1.1 555,248 - MPMX19_00539 0.65 -1.5 555,385 + MPMX19_00539 0.72 -0.9 555,385 + MPMX19_00539 0.72 +0.6 555,385 + MPMX19_00539 0.72 +0.1 555,385 + MPMX19_00539 0.72 -2.1 555,385 + MPMX19_00539 0.72 -0.6 555,385 + MPMX19_00539 0.72 -0.3 555,385 + MPMX19_00539 0.72 -0.1 555,385 + MPMX19_00539 0.72 -0.6 555,385 + MPMX19_00539 0.72 -1.1 555,385 + MPMX19_00539 0.72 -0.4 555,385 + MPMX19_00539 0.72 -0.5 555,386 - MPMX19_00539 0.72 +0.5 555,386 - MPMX19_00539 0.72 +1.4 555,386 - MPMX19_00539 0.72 -0.6 555,386 - MPMX19_00539 0.72 -1.9 555,386 - MPMX19_00539 0.72 +0.7 555,386 - MPMX19_00539 0.72 -0.1 555,568 + MPMX19_00539 0.81 -0.2 555,568 + MPMX19_00539 0.81 +0.1 555,568 + MPMX19_00539 0.81 -2.2 555,568 + MPMX19_00539 0.81 -0.0 555,568 + MPMX19_00539 0.81 -2.5 555,568 + MPMX19_00539 0.81 -0.1 555,568 + MPMX19_00539 0.81 -0.3 555,568 + MPMX19_00539 0.81 -1.0 555,569 - MPMX19_00539 0.81 +0.1 555,569 - MPMX19_00539 0.81 -0.5 555,569 - MPMX19_00539 0.81 -0.3 555,569 - MPMX19_00539 0.81 -2.5 555,569 - MPMX19_00539 0.81 +1.4 555,569 - MPMX19_00539 0.81 -0.2 555,569 - MPMX19_00539 0.81 -1.3 556,017 + -0.6 556,017 + +0.7 556,017 + +0.7 556,017 + +0.5 556,017 + -0.6 556,017 + -0.4 556,017 + -0.1 556,017 + -1.1 556,017 + -1.2 556,017 + +0.7 556,017 + +0.2 556,017 + +0.4 556,017 + -0.3 556,018 - +0.4 556,018 - -0.4 556,018 - +0.2 556,018 - -1.3 556,018 - -0.6 556,018 - -1.5 556,018 - -0.5 556,018 - +0.5 556,137 + -0.1 556,137 + +0.9 556,137 + -0.4 556,137 + -2.5 556,137 + +0.7 556,137 + +0.1 556,137 + -1.0 556,137 + -0.9 556,137 + +0.1 556,138 - +0.1 556,138 - -1.5 556,138 - +0.5 556,138 - -0.2 556,138 - +0.9 556,138 - -1.8 556,138 - -0.7 556,138 - -0.5 556,138 - -0.6 556,138 - +1.4 556,138 - -0.2 556,138 - -0.2 556,138 - +0.4 556,138 - -1.5 556,138 - +0.5 556,138 - +0.2 556,191 + +0.7 556,191 + +0.4 556,191 + +0.1 556,192 - -0.8 556,302 + MPMX19_00540 0.20 -0.3 556,302 + MPMX19_00540 0.20 -0.1 556,302 + MPMX19_00540 0.20 -1.0 556,302 + MPMX19_00540 0.20 -0.1 556,303 - MPMX19_00540 0.20 +0.3 556,303 - MPMX19_00540 0.20 -1.6 556,303 - MPMX19_00540 0.20 +0.8 556,395 + MPMX19_00540 0.31 +0.1 556,395 + MPMX19_00540 0.31 -0.8 556,395 + MPMX19_00540 0.31 -0.2 556,395 + MPMX19_00540 0.31 -1.5 556,396 - MPMX19_00540 0.31 +0.5 556,396 - MPMX19_00540 0.31 -1.5 556,455 + MPMX19_00540 0.38 -0.9 556,456 - MPMX19_00540 0.38 -0.1 556,656 + MPMX19_00540 0.61 +0.2 556,656 + MPMX19_00540 0.61 +0.4 556,656 + MPMX19_00540 0.61 -0.1 556,656 + MPMX19_00540 0.61 +0.8 556,656 + MPMX19_00540 0.61 +0.1 556,656 + MPMX19_00540 0.61 +0.6 556,656 + MPMX19_00540 0.61 -2.1 556,656 + MPMX19_00540 0.61 +0.2 556,656 + MPMX19_00540 0.61 -0.3 556,656 + MPMX19_00540 0.61 +0.8 556,656 + MPMX19_00540 0.61 -0.4 556,656 + MPMX19_00540 0.61 -0.2 556,656 + MPMX19_00540 0.61 -0.4 556,656 + MPMX19_00540 0.61 -0.4 556,657 - MPMX19_00540 0.61 +1.7 556,657 - MPMX19_00540 0.61 +0.3 556,657 - MPMX19_00540 0.61 -1.3 556,657 - MPMX19_00540 0.61 -1.5 556,657 - MPMX19_00540 0.61 +0.7 556,657 - MPMX19_00540 0.61 -0.8 556,657 - MPMX19_00540 0.61 -0.2 556,657 - MPMX19_00540 0.61 +0.7 556,657 - MPMX19_00540 0.61 -0.9 556,657 - MPMX19_00540 0.61 +1.7 556,657 - MPMX19_00540 0.61 +0.7 556,657 - MPMX19_00540 0.61 -0.5 556,657 - MPMX19_00540 0.61 -0.1 557,023 + +0.5 557,023 + +0.5 557,024 - -1.0 557,024 - +0.7 557,024 - +1.1 557,024 - +0.1 557,413 + MPMX19_00541 0.45 +0.5 557,413 + MPMX19_00541 0.45 -0.6 557,413 + MPMX19_00541 0.45 -0.0 557,413 + MPMX19_00541 0.45 -1.0 557,414 - MPMX19_00541 0.45 -0.7 557,414 - MPMX19_00541 0.45 -2.1 557,557 + MPMX19_00541 0.65 -0.3 557,557 + MPMX19_00541 0.65 +0.5 557,557 + MPMX19_00541 0.65 +0.3 557,557 + MPMX19_00541 0.65 -1.4 557,557 + MPMX19_00541 0.65 -1.1 557,557 + MPMX19_00541 0.65 +0.5 557,557 + MPMX19_00541 0.65 +0.3 557,557 + MPMX19_00541 0.65 -0.4 557,557 + MPMX19_00541 0.65 -0.2 557,557 + MPMX19_00541 0.65 +0.9 557,558 - MPMX19_00541 0.65 +0.4 557,558 - MPMX19_00541 0.65 -0.1 557,558 - MPMX19_00541 0.65 +0.2 557,558 - MPMX19_00541 0.65 +0.5 557,558 - MPMX19_00541 0.65 -0.2 557,558 - MPMX19_00541 0.65 -0.3 557,558 - MPMX19_00541 0.65 -0.4 557,558 - MPMX19_00541 0.65 -0.9 557,558 - MPMX19_00541 0.65 -0.1 557,558 - MPMX19_00541 0.65 -0.6 557,558 - MPMX19_00541 0.65 -2.1 557,558 - MPMX19_00541 0.65 -0.7 557,824 + -0.2 557,824 + -0.3 557,825 - -0.9 557,910 + +1.1 557,910 + -0.3 557,910 + -0.4 557,911 - -0.6 557,911 - -1.0 557,911 - -0.3 557,911 - -1.6 557,911 - -0.0
Or see this region's nucleotide sequence