Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00111 and MPMX19_00112 are separated by 219 nucleotides MPMX19_00112 and MPMX19_00113 are separated by 51 nucleotides MPMX19_00113 and MPMX19_00114 overlap by 4 nucleotides MPMX19_00114 and MPMX19_00115 are separated by 30 nucleotides
MPMX19_00111: MPMX19_00111 - Lysine--tRNA ligase, at 121,043 to 122,611
_00111
MPMX19_00112: MPMX19_00112 - Multidrug transporter EmrE, at 122,831 to 123,154
_00112
MPMX19_00113: MPMX19_00113 - HTH-type transcriptional regulator, at 123,206 to 123,544
_00113
MPMX19_00114: MPMX19_00114 - hypothetical protein, at 123,541 to 124,014
_00114
MPMX19_00115: MPMX19_00115 - hypothetical protein, at 124,045 to 126,819
_00115
Position (kb) 123
124 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 122.640 kb on - strand at 122.640 kb on - strand at 122.640 kb on - strand at 122.667 kb on - strand at 122.667 kb on - strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.804 kb on + strand at 122.804 kb on + strand at 122.804 kb on + strand at 122.805 kb on - strand at 122.805 kb on - strand at 122.805 kb on - strand at 122.805 kb on - strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.946 kb on - strand, within MPMX19_00112 at 123.005 kb on + strand, within MPMX19_00112 at 123.005 kb on + strand, within MPMX19_00112 at 123.006 kb on - strand, within MPMX19_00112 at 123.152 kb on + strand at 123.152 kb on + strand at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 124.012 kb on + strand at 124.012 kb on + strand at 124.012 kb on + strand at 124.012 kb on + strand at 124.012 kb on + strand at 124.012 kb on + strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.029 kb on + strand at 124.029 kb on + strand at 124.029 kb on + strand at 124.030 kb on - strand at 124.030 kb on - strand at 124.030 kb on - strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.125 kb on - strand at 124.125 kb on - strand at 124.125 kb on - strand at 124.125 kb on - strand at 124.228 kb on + strand at 124.228 kb on + strand at 124.228 kb on + strand at 124.228 kb on + strand at 124.228 kb on + strand at 124.228 kb on + strand at 124.229 kb on - strand at 124.229 kb on - strand at 124.229 kb on - strand at 124.229 kb on - strand at 124.229 kb on - strand at 124.229 kb on - strand at 124.229 kb on - strand at 124.229 kb on - strand at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.328 kb on + strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.329 kb on - strand, within MPMX19_00115 at 124.343 kb on + strand, within MPMX19_00115 at 124.344 kb on - strand, within MPMX19_00115 at 124.344 kb on - strand, within MPMX19_00115
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 122,640 - -0.3 122,640 - -1.4 122,640 - +0.8 122,667 - -1.5 122,667 - +0.5 122,723 + -0.0 122,723 + +0.0 122,723 + -0.4 122,723 + -0.6 122,723 + +0.2 122,723 + -1.0 122,724 - -0.0 122,724 - +0.2 122,724 - -1.5 122,724 - -1.2 122,724 - -0.5 122,724 - -2.5 122,724 - +0.4 122,804 + +0.2 122,804 + -0.2 122,804 + -1.2 122,805 - +0.1 122,805 - +1.4 122,805 - -1.0 122,805 - +0.4 122,843 + -1.0 122,843 + -0.9 122,843 + -1.0 122,843 + +1.0 122,843 + -0.2 122,843 + -2.1 122,844 - +0.7 122,844 - +1.4 122,844 - +0.3 122,844 - -0.9 122,844 - -0.5 122,844 - -0.2 122,945 + MPMX19_00112 0.35 +1.1 122,945 + MPMX19_00112 0.35 +0.6 122,945 + MPMX19_00112 0.35 -0.7 122,945 + MPMX19_00112 0.35 -1.0 122,945 + MPMX19_00112 0.35 +0.7 122,945 + MPMX19_00112 0.35 -1.5 122,945 + MPMX19_00112 0.35 -1.8 122,946 - MPMX19_00112 0.35 +0.7 123,005 + MPMX19_00112 0.54 +0.1 123,005 + MPMX19_00112 0.54 -0.1 123,006 - MPMX19_00112 0.54 -0.8 123,152 + -1.8 123,152 + -0.7 123,895 + MPMX19_00114 0.75 +0.1 123,895 + MPMX19_00114 0.75 -2.6 123,895 + MPMX19_00114 0.75 +0.6 123,895 + MPMX19_00114 0.75 +0.3 123,895 + MPMX19_00114 0.75 +0.2 123,895 + MPMX19_00114 0.75 -0.7 123,895 + MPMX19_00114 0.75 +1.6 123,895 + MPMX19_00114 0.75 -0.9 123,895 + MPMX19_00114 0.75 -0.8 123,895 + MPMX19_00114 0.75 +0.4 123,895 + MPMX19_00114 0.75 -3.0 123,896 - MPMX19_00114 0.75 -0.9 123,896 - MPMX19_00114 0.75 -0.5 123,896 - MPMX19_00114 0.75 -0.2 123,896 - MPMX19_00114 0.75 -1.2 123,896 - MPMX19_00114 0.75 +0.2 123,896 - MPMX19_00114 0.75 -1.1 123,896 - MPMX19_00114 0.75 +0.1 123,896 - MPMX19_00114 0.75 +0.7 123,896 - MPMX19_00114 0.75 -1.4 123,896 - MPMX19_00114 0.75 +0.8 124,012 + -0.4 124,012 + +0.0 124,012 + -0.3 124,012 + -0.8 124,012 + -0.1 124,012 + -1.4 124,013 - +0.9 124,013 - -1.5 124,013 - -2.0 124,013 - -0.5 124,013 - +0.6 124,013 - +0.4 124,013 - -0.7 124,013 - -1.0 124,029 + -2.1 124,029 + -0.6 124,029 + -0.8 124,030 - +0.1 124,030 - -0.0 124,030 - +0.0 124,046 + +1.3 124,046 + -1.4 124,046 + +0.2 124,046 + -1.4 124,046 + -1.0 124,046 + -0.5 124,046 + +0.4 124,046 + -0.2 124,046 + +0.7 124,046 + -0.6 124,046 + -1.6 124,047 - -1.0 124,047 - +0.4 124,047 - -2.5 124,047 - -0.8 124,047 - +0.3 124,047 - -0.1 124,047 - +0.8 124,047 - -0.2 124,047 - +0.1 124,047 - -0.4 124,047 - +0.8 124,047 - -1.3 124,124 + -0.9 124,124 + -0.5 124,124 + +0.1 124,124 + -0.7 124,124 + -1.8 124,124 + +0.6 124,124 + +0.5 124,124 + +0.1 124,124 + +0.0 124,124 + -0.9 124,125 - -0.9 124,125 - -0.1 124,125 - +0.7 124,125 - -0.4 124,228 + -0.5 124,228 + +0.4 124,228 + -1.9 124,228 + -0.0 124,228 + -2.5 124,228 + +0.7 124,229 - +0.2 124,229 - -0.7 124,229 - -0.5 124,229 - -0.4 124,229 - +1.1 124,229 - +0.8 124,229 - +0.2 124,229 - -0.2 124,328 + MPMX19_00115 0.10 -0.0 124,328 + MPMX19_00115 0.10 -2.5 124,328 + MPMX19_00115 0.10 +0.3 124,328 + MPMX19_00115 0.10 +0.6 124,328 + MPMX19_00115 0.10 -0.9 124,328 + MPMX19_00115 0.10 -0.2 124,328 + MPMX19_00115 0.10 -0.4 124,328 + MPMX19_00115 0.10 -0.8 124,328 + MPMX19_00115 0.10 -1.3 124,328 + MPMX19_00115 0.10 +0.1 124,328 + MPMX19_00115 0.10 -0.9 124,329 - MPMX19_00115 0.10 -1.5 124,329 - MPMX19_00115 0.10 +0.2 124,329 - MPMX19_00115 0.10 -0.1 124,329 - MPMX19_00115 0.10 -0.5 124,329 - MPMX19_00115 0.10 -0.3 124,329 - MPMX19_00115 0.10 -0.6 124,329 - MPMX19_00115 0.10 -0.5 124,329 - MPMX19_00115 0.10 -0.4 124,329 - MPMX19_00115 0.10 +0.3 124,329 - MPMX19_00115 0.10 -0.2 124,329 - MPMX19_00115 0.10 +0.2 124,329 - MPMX19_00115 0.10 +1.0 124,343 + MPMX19_00115 0.11 -0.2 124,344 - MPMX19_00115 0.11 -1.1 124,344 - MPMX19_00115 0.11 +0.2
Or see this region's nucleotide sequence