Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00092 and MPMX19_00093 are separated by 497 nucleotides MPMX19_00093 and MPMX19_00094 overlap by 17 nucleotides MPMX19_00094 and MPMX19_00095 are separated by 351 nucleotides
MPMX19_00092: MPMX19_00092 - Elongation factor 4, at 98,458 to 100,260
_00092
MPMX19_00093: MPMX19_00093 - hypothetical protein, at 100,758 to 101,129
_00093
MPMX19_00094: MPMX19_00094 - hypothetical protein, at 101,113 to 101,391
_00094
MPMX19_00095: MPMX19_00095 - ATP-dependent RNA helicase HrpB, at 101,743 to 104,307
_00095
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.296 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.353 kb on - strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.676 kb on + strand at 100.676 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.739 kb on + strand at 100.740 kb on - strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.760 kb on - strand at 100.760 kb on - strand at 101.258 kb on + strand, within MPMX19_00094 at 101.258 kb on + strand, within MPMX19_00094 at 101.259 kb on - strand, within MPMX19_00094 at 101.285 kb on + strand, within MPMX19_00094 at 101.286 kb on - strand, within MPMX19_00094 at 101.286 kb on - strand, within MPMX19_00094 at 101.286 kb on - strand, within MPMX19_00094 at 101.384 kb on + strand at 101.384 kb on + strand at 101.384 kb on + strand at 101.384 kb on + strand at 101.384 kb on + strand at 101.385 kb on - strand at 101.385 kb on - strand at 101.385 kb on - strand at 101.466 kb on - strand at 101.466 kb on - strand at 101.466 kb on - strand at 101.473 kb on - strand at 101.473 kb on - strand at 101.514 kb on + strand at 101.514 kb on + strand at 101.514 kb on + strand at 101.514 kb on + strand at 101.515 kb on - strand at 101.515 kb on - strand at 101.516 kb on + strand at 101.516 kb on + strand at 101.516 kb on + strand at 101.517 kb on - strand at 101.517 kb on - strand at 101.517 kb on - strand at 101.529 kb on + strand at 101.530 kb on - strand at 101.530 kb on - strand at 101.531 kb on + strand at 101.531 kb on + strand at 101.531 kb on + strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.542 kb on - strand at 101.554 kb on + strand at 101.554 kb on + strand at 101.554 kb on + strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.570 kb on - strand at 101.571 kb on + strand at 101.572 kb on - strand at 101.745 kb on - strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.805 kb on - strand at 101.805 kb on - strand at 101.805 kb on - strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 102.017 kb on + strand, within MPMX19_00095 at 102.017 kb on + strand, within MPMX19_00095 at 102.018 kb on - strand, within MPMX19_00095 at 102.018 kb on - strand, within MPMX19_00095 at 102.018 kb on - strand, within MPMX19_00095 at 102.233 kb on + strand, within MPMX19_00095 at 102.233 kb on + strand, within MPMX19_00095 at 102.233 kb on + strand, within MPMX19_00095 at 102.233 kb on + strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 100,296 - -0.3 100,296 - +0.5 100,296 - -0.6 100,296 - -2.5 100,353 - -1.0 100,649 + +1.0 100,649 + -0.2 100,649 + -0.1 100,649 + -0.0 100,649 + -0.2 100,650 - +0.2 100,650 - -0.2 100,650 - -0.4 100,650 - +0.0 100,650 - -0.2 100,650 - -0.0 100,650 - +0.8 100,654 + +0.3 100,654 + +0.9 100,654 + -1.1 100,654 + -0.2 100,654 + +0.2 100,654 + -1.5 100,654 + -1.4 100,654 + +0.2 100,654 + -1.1 100,654 + -0.8 100,654 + -0.5 100,654 + +0.5 100,654 + -0.2 100,654 + -0.3 100,654 + -0.2 100,654 + +0.9 100,654 + +0.5 100,654 + +0.5 100,654 + -2.3 100,655 - -0.2 100,655 - +0.8 100,655 - +1.1 100,655 - +0.7 100,655 - -0.4 100,655 - -1.4 100,655 - -0.3 100,655 - -0.1 100,655 - -0.5 100,655 - -1.5 100,655 - -1.4 100,655 - +0.5 100,655 - +1.8 100,655 - -0.4 100,655 - -0.1 100,655 - -0.0 100,655 - +0.3 100,655 - +0.7 100,655 - -1.1 100,655 - +0.5 100,676 + +0.6 100,676 + -0.1 100,712 + -1.6 100,712 + -0.5 100,712 + +1.2 100,712 + -0.4 100,713 - -1.8 100,713 - -0.8 100,713 - -0.3 100,713 - +0.5 100,713 - +0.8 100,739 + -0.1 100,740 - +0.8 100,759 + -1.9 100,759 + -0.8 100,759 + +0.1 100,759 + -0.5 100,759 + +0.2 100,759 + -1.0 100,759 + +0.2 100,759 + -0.8 100,759 + -0.6 100,759 + +0.4 100,759 + -0.7 100,759 + +0.6 100,760 - +0.5 100,760 - -0.7 101,258 + MPMX19_00094 0.52 -1.6 101,258 + MPMX19_00094 0.52 -2.3 101,259 - MPMX19_00094 0.52 -1.4 101,285 + MPMX19_00094 0.62 -0.5 101,286 - MPMX19_00094 0.62 +2.1 101,286 - MPMX19_00094 0.62 -0.3 101,286 - MPMX19_00094 0.62 +0.2 101,384 + -0.7 101,384 + -0.8 101,384 + -0.7 101,384 + -1.8 101,384 + +0.1 101,385 - -1.8 101,385 - +0.9 101,385 - -0.3 101,466 - -0.0 101,466 - -1.1 101,466 - -1.0 101,473 - -1.4 101,473 - +0.8 101,514 + +0.2 101,514 + +0.6 101,514 + +0.7 101,514 + -0.3 101,515 - -0.4 101,515 - -0.9 101,516 + -0.0 101,516 + -1.2 101,516 + -0.7 101,517 - -0.7 101,517 - -3.1 101,517 - -0.2 101,529 + -0.5 101,530 - -0.4 101,530 - -0.8 101,531 + +0.8 101,531 + -1.4 101,531 + -2.2 101,532 - -0.2 101,532 - -1.4 101,532 - -0.3 101,542 - -0.8 101,554 + -1.4 101,554 + -2.1 101,554 + -0.4 101,555 - -0.4 101,555 - +0.2 101,555 - +0.4 101,555 - -1.3 101,555 - -0.4 101,555 - +0.9 101,570 - -0.8 101,571 + +1.3 101,572 - -0.4 101,745 - +0.3 101,804 + +0.9 101,804 + -0.5 101,804 + -0.3 101,804 + -1.2 101,804 + -0.1 101,804 + -1.2 101,804 + -0.0 101,804 + +0.1 101,805 - +0.5 101,805 - +0.2 101,805 - +0.6 101,849 + +0.7 101,849 + +0.5 101,849 + -1.9 101,849 + -1.0 101,849 + -2.1 101,849 + +0.2 101,849 + +0.6 101,849 + +1.5 101,850 - -0.9 101,850 - -2.1 101,850 - -0.8 101,850 - -0.5 101,850 - -0.7 101,850 - -0.5 101,850 - -2.7 101,850 - +0.6 101,850 - +0.2 101,850 - -0.1 101,850 - +0.1 101,850 - +0.7 101,850 - +0.2 101,850 - +0.4 102,017 + MPMX19_00095 0.11 +1.5 102,017 + MPMX19_00095 0.11 -0.8 102,018 - MPMX19_00095 0.11 -2.6 102,018 - MPMX19_00095 0.11 +1.1 102,018 - MPMX19_00095 0.11 +0.2 102,233 + MPMX19_00095 0.19 -0.0 102,233 + MPMX19_00095 0.19 -1.4 102,233 + MPMX19_00095 0.19 +0.8 102,233 + MPMX19_00095 0.19 -1.1 102,234 - MPMX19_00095 0.19 +0.6 102,234 - MPMX19_00095 0.19 -1.2 102,234 - MPMX19_00095 0.19 -1.2 102,234 - MPMX19_00095 0.19 +0.9 102,234 - MPMX19_00095 0.19 -0.2 102,234 - MPMX19_00095 0.19 -0.2
Or see this region's nucleotide sequence