Experiment: Amylose from potato 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS09020 and HMPREF1181_RS09025 are separated by 29 nucleotides HMPREF1181_RS09025 and HMPREF1181_RS09030 are separated by 5 nucleotides HMPREF1181_RS09030 and HMPREF1181_RS09035 are separated by 173 nucleotides
HMPREF1181_RS09020: HMPREF1181_RS09020 - 4Fe-4S binding protein, at 405,748 to 406,257
_RS09020
HMPREF1181_RS09025: HMPREF1181_RS09025 - NADH-quinone oxidoreductase subunit J, at 406,287 to 406,799
_RS09025
HMPREF1181_RS09030: HMPREF1181_RS09030 - NADH-quinone oxidoreductase subunit NuoK, at 406,805 to 407,113
_RS09030
HMPREF1181_RS09035: HMPREF1181_RS09035 - NADH-quinone oxidoreductase subunit L, at 407,287 to 409,200
_RS09035
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1 at 405.866 kb on - strand, within HMPREF1181_RS09020 at 406.050 kb on - strand, within HMPREF1181_RS09020 at 406.209 kb on - strand at 406.209 kb on - strand at 406.256 kb on - strand at 406.313 kb on - strand at 406.318 kb on - strand at 406.379 kb on - strand, within HMPREF1181_RS09025 at 406.393 kb on - strand, within HMPREF1181_RS09025 at 406.393 kb on - strand, within HMPREF1181_RS09025 at 406.393 kb on - strand, within HMPREF1181_RS09025 at 406.446 kb on - strand, within HMPREF1181_RS09025 at 406.446 kb on - strand, within HMPREF1181_RS09025 at 406.446 kb on - strand, within HMPREF1181_RS09025 at 406.446 kb on - strand, within HMPREF1181_RS09025 at 406.470 kb on - strand, within HMPREF1181_RS09025 at 406.477 kb on - strand, within HMPREF1181_RS09025 at 406.500 kb on + strand, within HMPREF1181_RS09025 at 406.632 kb on - strand, within HMPREF1181_RS09025 at 406.632 kb on - strand, within HMPREF1181_RS09025 at 406.714 kb on - strand, within HMPREF1181_RS09025 at 406.724 kb on - strand, within HMPREF1181_RS09025 at 406.784 kb on - strand at 406.804 kb on + strand at 406.821 kb on - strand at 406.917 kb on + strand, within HMPREF1181_RS09030 at 407.054 kb on - strand, within HMPREF1181_RS09030 at 407.160 kb on - strand at 407.286 kb on + strand at 407.293 kb on + strand at 407.294 kb on - strand at 407.294 kb on - strand at 407.303 kb on + strand at 407.435 kb on + strand at 407.435 kb on + strand at 407.440 kb on + strand at 407.441 kb on - strand at 407.582 kb on + strand, within HMPREF1181_RS09035 at 407.625 kb on + strand, within HMPREF1181_RS09035 at 407.654 kb on - strand, within HMPREF1181_RS09035 at 407.726 kb on - strand, within HMPREF1181_RS09035 at 407.726 kb on - strand, within HMPREF1181_RS09035 at 407.726 kb on - strand, within HMPREF1181_RS09035 at 407.768 kb on + strand, within HMPREF1181_RS09035 at 407.776 kb on + strand, within HMPREF1181_RS09035 at 407.869 kb on + strand, within HMPREF1181_RS09035 at 407.890 kb on + strand, within HMPREF1181_RS09035 at 407.890 kb on + strand, within HMPREF1181_RS09035 at 407.890 kb on + strand, within HMPREF1181_RS09035 at 408.088 kb on + strand, within HMPREF1181_RS09035
Per-strain Table
Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/ml (C) remove 405,866 - HMPREF1181_RS09020 0.23 -1.2 406,050 - HMPREF1181_RS09020 0.59 -0.5 406,209 - +0.2 406,209 - -1.6 406,256 - +1.7 406,313 - -0.6 406,318 - -0.1 406,379 - HMPREF1181_RS09025 0.18 -0.1 406,393 - HMPREF1181_RS09025 0.21 -0.2 406,393 - HMPREF1181_RS09025 0.21 -0.7 406,393 - HMPREF1181_RS09025 0.21 +1.3 406,446 - HMPREF1181_RS09025 0.31 +0.7 406,446 - HMPREF1181_RS09025 0.31 -1.1 406,446 - HMPREF1181_RS09025 0.31 +1.5 406,446 - HMPREF1181_RS09025 0.31 -0.4 406,470 - HMPREF1181_RS09025 0.36 +1.7 406,477 - HMPREF1181_RS09025 0.37 +0.2 406,500 + HMPREF1181_RS09025 0.42 -2.5 406,632 - HMPREF1181_RS09025 0.67 +0.0 406,632 - HMPREF1181_RS09025 0.67 -0.5 406,714 - HMPREF1181_RS09025 0.83 -2.1 406,724 - HMPREF1181_RS09025 0.85 -1.6 406,784 - +0.1 406,804 + -1.2 406,821 - -0.9 406,917 + HMPREF1181_RS09030 0.36 -0.3 407,054 - HMPREF1181_RS09030 0.81 -0.6 407,160 - +1.2 407,286 + -1.0 407,293 + +0.0 407,294 - -0.4 407,294 - -0.7 407,303 + +0.8 407,435 + +0.2 407,435 + +0.3 407,440 + +1.6 407,441 - -0.0 407,582 + HMPREF1181_RS09035 0.15 +0.2 407,625 + HMPREF1181_RS09035 0.18 +0.1 407,654 - HMPREF1181_RS09035 0.19 -1.5 407,726 - HMPREF1181_RS09035 0.23 -0.6 407,726 - HMPREF1181_RS09035 0.23 +0.0 407,726 - HMPREF1181_RS09035 0.23 -0.2 407,768 + HMPREF1181_RS09035 0.25 +1.3 407,776 + HMPREF1181_RS09035 0.26 +0.3 407,869 + HMPREF1181_RS09035 0.30 -1.1 407,890 + HMPREF1181_RS09035 0.32 -0.6 407,890 + HMPREF1181_RS09035 0.32 -1.0 407,890 + HMPREF1181_RS09035 0.32 -1.0 408,088 + HMPREF1181_RS09035 0.42 +0.9
Or see this region's nucleotide sequence