Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS07770

Experiment: Amylose from potato 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS07760 and HMPREF1181_RS07765 are separated by 289 nucleotidesHMPREF1181_RS07765 and HMPREF1181_RS07770 are separated by 269 nucleotidesHMPREF1181_RS07770 and HMPREF1181_RS07775 are separated by 102 nucleotidesHMPREF1181_RS07775 and HMPREF1181_RS07780 are separated by 6 nucleotides HMPREF1181_RS07760: HMPREF1181_RS07760 - hypothetical protein, at 47,719 to 48,351 _RS07760 HMPREF1181_RS07765: HMPREF1181_RS07765 - PepSY-like domain-containing protein, at 48,641 to 49,078 _RS07765 HMPREF1181_RS07770: HMPREF1181_RS07770 - hypothetical protein, at 49,348 to 50,769 _RS07770 HMPREF1181_RS07775: HMPREF1181_RS07775 - hypothetical protein, at 50,872 to 51,345 _RS07775 HMPREF1181_RS07780: HMPREF1181_RS07780 - peptide-methionine (R)-S-oxide reductase MsrB, at 51,352 to 52,407 _RS07780 Position (kb) 49 50 51Strain fitness (log2 ratio) -2 -1 0 1 2 3at 48.385 kb on - strandat 48.385 kb on - strandat 48.478 kb on + strandat 48.509 kb on + strandat 48.599 kb on + strandat 48.619 kb on + strandat 48.632 kb on + strandat 48.640 kb on + strandat 48.655 kb on + strandat 48.655 kb on + strandat 48.671 kb on - strandat 48.710 kb on - strand, within HMPREF1181_RS07765at 48.723 kb on + strand, within HMPREF1181_RS07765at 48.724 kb on - strand, within HMPREF1181_RS07765at 48.755 kb on - strand, within HMPREF1181_RS07765at 48.755 kb on - strand, within HMPREF1181_RS07765at 48.755 kb on - strand, within HMPREF1181_RS07765at 48.755 kb on - strand, within HMPREF1181_RS07765at 48.810 kb on + strand, within HMPREF1181_RS07765at 48.825 kb on - strand, within HMPREF1181_RS07765at 48.825 kb on - strand, within HMPREF1181_RS07765at 48.825 kb on - strand, within HMPREF1181_RS07765at 48.831 kb on + strand, within HMPREF1181_RS07765at 48.832 kb on - strand, within HMPREF1181_RS07765at 48.960 kb on - strand, within HMPREF1181_RS07765at 49.005 kb on - strand, within HMPREF1181_RS07765at 49.079 kb on + strandat 49.079 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.082 kb on + strandat 49.083 kb on - strandat 49.121 kb on - strandat 49.141 kb on - strandat 49.176 kb on + strandat 49.176 kb on + strandat 49.176 kb on + strandat 49.177 kb on - strandat 49.177 kb on - strandat 49.178 kb on + strandat 49.178 kb on + strandat 49.179 kb on - strandat 49.179 kb on - strandat 49.180 kb on + strandat 49.195 kb on + strandat 49.225 kb on + strandat 49.226 kb on - strandat 49.226 kb on - strandat 49.230 kb on - strandat 49.233 kb on - strandat 49.341 kb on - strandat 49.375 kb on - strandat 49.549 kb on - strand, within HMPREF1181_RS07770at 49.549 kb on - strand, within HMPREF1181_RS07770at 49.552 kb on + strand, within HMPREF1181_RS07770at 49.659 kb on + strand, within HMPREF1181_RS07770at 49.660 kb on - strand, within HMPREF1181_RS07770at 49.673 kb on + strand, within HMPREF1181_RS07770at 49.674 kb on - strand, within HMPREF1181_RS07770at 49.715 kb on + strand, within HMPREF1181_RS07770at 49.721 kb on + strand, within HMPREF1181_RS07770at 49.721 kb on + strand, within HMPREF1181_RS07770at 49.721 kb on + strand, within HMPREF1181_RS07770at 49.725 kb on + strand, within HMPREF1181_RS07770at 49.833 kb on - strand, within HMPREF1181_RS07770at 49.884 kb on + strand, within HMPREF1181_RS07770at 49.929 kb on - strand, within HMPREF1181_RS07770at 50.013 kb on + strand, within HMPREF1181_RS07770at 50.014 kb on - strand, within HMPREF1181_RS07770at 50.014 kb on - strand, within HMPREF1181_RS07770at 50.014 kb on - strand, within HMPREF1181_RS07770at 50.033 kb on + strand, within HMPREF1181_RS07770at 50.034 kb on - strand, within HMPREF1181_RS07770at 50.038 kb on - strand, within HMPREF1181_RS07770at 50.039 kb on + strand, within HMPREF1181_RS07770at 50.076 kb on - strand, within HMPREF1181_RS07770at 50.111 kb on + strand, within HMPREF1181_RS07770at 50.112 kb on - strand, within HMPREF1181_RS07770at 50.112 kb on - strand, within HMPREF1181_RS07770at 50.202 kb on - strand, within HMPREF1181_RS07770at 50.215 kb on - strand, within HMPREF1181_RS07770at 50.226 kb on - strand, within HMPREF1181_RS07770at 50.234 kb on + strand, within HMPREF1181_RS07770at 50.234 kb on + strand, within HMPREF1181_RS07770at 50.234 kb on + strand, within HMPREF1181_RS07770at 50.234 kb on + strand, within HMPREF1181_RS07770at 50.235 kb on - strand, within HMPREF1181_RS07770at 50.288 kb on + strand, within HMPREF1181_RS07770at 50.288 kb on + strand, within HMPREF1181_RS07770at 50.288 kb on + strand, within HMPREF1181_RS07770at 50.312 kb on + strand, within HMPREF1181_RS07770at 50.325 kb on - strand, within HMPREF1181_RS07770at 50.379 kb on + strand, within HMPREF1181_RS07770at 50.383 kb on - strand, within HMPREF1181_RS07770at 50.414 kb on + strand, within HMPREF1181_RS07770at 50.425 kb on - strand, within HMPREF1181_RS07770at 50.425 kb on - strand, within HMPREF1181_RS07770at 50.429 kb on + strand, within HMPREF1181_RS07770at 50.464 kb on - strand, within HMPREF1181_RS07770at 50.464 kb on - strand, within HMPREF1181_RS07770at 50.515 kb on - strand, within HMPREF1181_RS07770at 50.550 kb on - strand, within HMPREF1181_RS07770at 50.557 kb on - strand, within HMPREF1181_RS07770at 50.558 kb on + strand, within HMPREF1181_RS07770at 50.559 kb on - strand, within HMPREF1181_RS07770at 50.587 kb on - strand, within HMPREF1181_RS07770at 50.616 kb on - strand, within HMPREF1181_RS07770at 50.657 kb on - strandat 50.657 kb on - strandat 50.707 kb on - strandat 50.731 kb on - strandat 50.747 kb on + strandat 50.762 kb on - strandat 50.778 kb on + strandat 50.888 kb on + strandat 50.889 kb on - strandat 50.893 kb on - strandat 50.921 kb on - strand, within HMPREF1181_RS07775at 50.921 kb on - strand, within HMPREF1181_RS07775at 50.966 kb on + strand, within HMPREF1181_RS07775at 50.966 kb on + strand, within HMPREF1181_RS07775at 50.967 kb on - strand, within HMPREF1181_RS07775at 51.109 kb on - strand, within HMPREF1181_RS07775at 51.240 kb on + strand, within HMPREF1181_RS07775at 51.335 kb on - strandat 51.335 kb on - strandat 51.335 kb on - strandat 51.337 kb on + strandat 51.338 kb on - strandat 51.346 kb on + strandat 51.527 kb on - strand, within HMPREF1181_RS07780at 51.544 kb on - strand, within HMPREF1181_RS07780at 51.651 kb on + strand, within HMPREF1181_RS07780at 51.651 kb on + strand, within HMPREF1181_RS07780at 51.651 kb on + strand, within HMPREF1181_RS07780at 51.654 kb on + strand, within HMPREF1181_RS07780at 51.662 kb on + strand, within HMPREF1181_RS07780at 51.662 kb on + strand, within HMPREF1181_RS07780at 51.662 kb on + strand, within HMPREF1181_RS07780at 51.690 kb on - strand, within HMPREF1181_RS07780at 51.737 kb on + strand, within HMPREF1181_RS07780

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Per-strain Table

Position Strand Gene LocusTag Fraction Amylose from potato 2.5 mg/ml (C)
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48,385 - -0.9
48,385 - +0.4
48,478 + +0.2
48,509 + -1.5
48,599 + +1.6
48,619 + +0.9
48,632 + +0.4
48,640 + +0.1
48,655 + -0.1
48,655 + -0.0
48,671 - -0.1
48,710 - HMPREF1181_RS07765 0.16 +0.9
48,723 + HMPREF1181_RS07765 0.19 -0.4
48,724 - HMPREF1181_RS07765 0.19 -1.2
48,755 - HMPREF1181_RS07765 0.26 -1.0
48,755 - HMPREF1181_RS07765 0.26 +1.9
48,755 - HMPREF1181_RS07765 0.26 +0.6
48,755 - HMPREF1181_RS07765 0.26 +2.0
48,810 + HMPREF1181_RS07765 0.39 +0.7
48,825 - HMPREF1181_RS07765 0.42 -0.2
48,825 - HMPREF1181_RS07765 0.42 -1.8
48,825 - HMPREF1181_RS07765 0.42 +0.2
48,831 + HMPREF1181_RS07765 0.43 +0.7
48,832 - HMPREF1181_RS07765 0.44 +0.5
48,960 - HMPREF1181_RS07765 0.73 -0.4
49,005 - HMPREF1181_RS07765 0.83 +0.8
49,079 + -0.0
49,079 + -0.6
49,082 + -0.1
49,082 + -0.8
49,082 + +0.6
49,082 + +0.2
49,083 - -1.3
49,121 - -0.3
49,141 - -0.3
49,176 + +0.9
49,176 + +1.1
49,176 + -1.1
49,177 - +0.3
49,177 - -0.3
49,178 + -0.7
49,178 + -0.2
49,179 - -0.5
49,179 - -2.7
49,180 + +1.2
49,195 + -0.4
49,225 + +1.3
49,226 - -1.1
49,226 - -0.2
49,230 - -0.1
49,233 - -0.6
49,341 - -1.2
49,375 - -1.0
49,549 - HMPREF1181_RS07770 0.14 +0.1
49,549 - HMPREF1181_RS07770 0.14 +0.9
49,552 + HMPREF1181_RS07770 0.14 +0.2
49,659 + HMPREF1181_RS07770 0.22 -0.4
49,660 - HMPREF1181_RS07770 0.22 -1.1
49,673 + HMPREF1181_RS07770 0.23 -0.2
49,674 - HMPREF1181_RS07770 0.23 +1.4
49,715 + HMPREF1181_RS07770 0.26 -0.1
49,721 + HMPREF1181_RS07770 0.26 +1.6
49,721 + HMPREF1181_RS07770 0.26 +1.1
49,721 + HMPREF1181_RS07770 0.26 +0.1
49,725 + HMPREF1181_RS07770 0.27 -0.0
49,833 - HMPREF1181_RS07770 0.34 -0.6
49,884 + HMPREF1181_RS07770 0.38 -0.5
49,929 - HMPREF1181_RS07770 0.41 +3.3
50,013 + HMPREF1181_RS07770 0.47 -0.8
50,014 - HMPREF1181_RS07770 0.47 +1.7
50,014 - HMPREF1181_RS07770 0.47 -0.8
50,014 - HMPREF1181_RS07770 0.47 -0.5
50,033 + HMPREF1181_RS07770 0.48 +1.3
50,034 - HMPREF1181_RS07770 0.48 -1.5
50,038 - HMPREF1181_RS07770 0.49 -0.4
50,039 + HMPREF1181_RS07770 0.49 -0.5
50,076 - HMPREF1181_RS07770 0.51 +1.3
50,111 + HMPREF1181_RS07770 0.54 +0.6
50,112 - HMPREF1181_RS07770 0.54 +0.1
50,112 - HMPREF1181_RS07770 0.54 +1.6
50,202 - HMPREF1181_RS07770 0.60 +1.3
50,215 - HMPREF1181_RS07770 0.61 -0.1
50,226 - HMPREF1181_RS07770 0.62 -0.6
50,234 + HMPREF1181_RS07770 0.62 +0.2
50,234 + HMPREF1181_RS07770 0.62 +0.2
50,234 + HMPREF1181_RS07770 0.62 -0.2
50,234 + HMPREF1181_RS07770 0.62 +0.1
50,235 - HMPREF1181_RS07770 0.62 -0.6
50,288 + HMPREF1181_RS07770 0.66 +0.3
50,288 + HMPREF1181_RS07770 0.66 +0.9
50,288 + HMPREF1181_RS07770 0.66 -0.1
50,312 + HMPREF1181_RS07770 0.68 -2.6
50,325 - HMPREF1181_RS07770 0.69 -1.6
50,379 + HMPREF1181_RS07770 0.73 -0.4
50,383 - HMPREF1181_RS07770 0.73 +0.9
50,414 + HMPREF1181_RS07770 0.75 -0.3
50,425 - HMPREF1181_RS07770 0.76 +1.1
50,425 - HMPREF1181_RS07770 0.76 +0.1
50,429 + HMPREF1181_RS07770 0.76 -0.3
50,464 - HMPREF1181_RS07770 0.78 -0.0
50,464 - HMPREF1181_RS07770 0.78 +1.0
50,515 - HMPREF1181_RS07770 0.82 +0.7
50,550 - HMPREF1181_RS07770 0.85 -0.7
50,557 - HMPREF1181_RS07770 0.85 +0.2
50,558 + HMPREF1181_RS07770 0.85 -0.3
50,559 - HMPREF1181_RS07770 0.85 +0.5
50,587 - HMPREF1181_RS07770 0.87 -1.3
50,616 - HMPREF1181_RS07770 0.89 +0.9
50,657 - -0.8
50,657 - +0.5
50,707 - +0.2
50,731 - -0.6
50,747 + -1.5
50,762 - +0.5
50,778 + -0.7
50,888 + -1.4
50,889 - -0.5
50,893 - +0.8
50,921 - HMPREF1181_RS07775 0.10 +1.3
50,921 - HMPREF1181_RS07775 0.10 -0.1
50,966 + HMPREF1181_RS07775 0.20 +1.8
50,966 + HMPREF1181_RS07775 0.20 -0.6
50,967 - HMPREF1181_RS07775 0.20 -1.4
51,109 - HMPREF1181_RS07775 0.50 +0.4
51,240 + HMPREF1181_RS07775 0.78 -0.3
51,335 - -0.4
51,335 - -0.4
51,335 - +0.8
51,337 + +1.3
51,338 - -0.3
51,346 + +0.3
51,527 - HMPREF1181_RS07780 0.17 -0.5
51,544 - HMPREF1181_RS07780 0.18 -1.0
51,651 + HMPREF1181_RS07780 0.28 -1.2
51,651 + HMPREF1181_RS07780 0.28 -1.0
51,651 + HMPREF1181_RS07780 0.28 +0.6
51,654 + HMPREF1181_RS07780 0.29 -0.7
51,662 + HMPREF1181_RS07780 0.29 +1.0
51,662 + HMPREF1181_RS07780 0.29 +0.7
51,662 + HMPREF1181_RS07780 0.29 -0.7
51,690 - HMPREF1181_RS07780 0.32 +0.4
51,737 + HMPREF1181_RS07780 0.36 -0.8

Or see this region's nucleotide sequence