Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS11395 and HMPREF1181_RS11400 are separated by 160 nucleotides HMPREF1181_RS11400 and HMPREF1181_RS11405 overlap by 38 nucleotides HMPREF1181_RS11405 and HMPREF1181_RS11410 are separated by 407 nucleotides
HMPREF1181_RS11395: HMPREF1181_RS11395 - RteC domain-containing protein, at 281,783 to 282,628
_RS11395
HMPREF1181_RS11400: HMPREF1181_RS11400 - helix-turn-helix domain-containing protein, at 282,789 to 283,205
_RS11400
HMPREF1181_RS11405: HMPREF1181_RS11405 - AAA family ATPase, at 283,168 to 285,231
_RS11405
HMPREF1181_RS11410: HMPREF1181_RS11410 - dihydrofolate reductase family protein, at 285,639 to 286,157
_RS11410
Position (kb) 283
284
285
286 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 282.171 kb on + strand, within HMPREF1181_RS11395 at 282.174 kb on - strand, within HMPREF1181_RS11395 at 282.174 kb on - strand, within HMPREF1181_RS11395 at 282.204 kb on + strand, within HMPREF1181_RS11395 at 282.260 kb on + strand, within HMPREF1181_RS11395 at 282.346 kb on - strand, within HMPREF1181_RS11395 at 282.352 kb on + strand, within HMPREF1181_RS11395 at 282.409 kb on + strand, within HMPREF1181_RS11395 at 282.432 kb on + strand, within HMPREF1181_RS11395 at 282.433 kb on - strand, within HMPREF1181_RS11395 at 282.451 kb on + strand, within HMPREF1181_RS11395 at 282.626 kb on + strand at 282.627 kb on - strand at 282.782 kb on + strand at 282.782 kb on + strand at 282.783 kb on - strand at 282.784 kb on + strand at 282.785 kb on - strand at 282.840 kb on - strand, within HMPREF1181_RS11400 at 282.854 kb on - strand, within HMPREF1181_RS11400 at 283.040 kb on + strand, within HMPREF1181_RS11400 at 283.074 kb on + strand, within HMPREF1181_RS11400 at 283.190 kb on + strand at 283.204 kb on - strand at 283.204 kb on - strand at 283.306 kb on + strand at 283.331 kb on - strand at 283.436 kb on + strand, within HMPREF1181_RS11405 at 283.600 kb on + strand, within HMPREF1181_RS11405 at 283.697 kb on - strand, within HMPREF1181_RS11405 at 283.729 kb on + strand, within HMPREF1181_RS11405 at 283.729 kb on + strand, within HMPREF1181_RS11405 at 284.051 kb on + strand, within HMPREF1181_RS11405 at 284.117 kb on + strand, within HMPREF1181_RS11405 at 284.117 kb on + strand, within HMPREF1181_RS11405 at 284.117 kb on + strand, within HMPREF1181_RS11405 at 284.118 kb on - strand, within HMPREF1181_RS11405 at 284.194 kb on - strand, within HMPREF1181_RS11405 at 284.208 kb on + strand, within HMPREF1181_RS11405 at 284.265 kb on + strand, within HMPREF1181_RS11405 at 284.347 kb on + strand, within HMPREF1181_RS11405 at 284.348 kb on - strand, within HMPREF1181_RS11405 at 284.401 kb on - strand, within HMPREF1181_RS11405 at 284.452 kb on + strand, within HMPREF1181_RS11405 at 284.492 kb on + strand, within HMPREF1181_RS11405 at 284.493 kb on - strand, within HMPREF1181_RS11405 at 284.737 kb on + strand, within HMPREF1181_RS11405 at 284.737 kb on + strand, within HMPREF1181_RS11405 at 284.738 kb on - strand, within HMPREF1181_RS11405 at 284.738 kb on - strand, within HMPREF1181_RS11405 at 284.832 kb on + strand, within HMPREF1181_RS11405 at 284.876 kb on + strand, within HMPREF1181_RS11405 at 284.962 kb on + strand, within HMPREF1181_RS11405 at 285.061 kb on + strand at 285.061 kb on + strand at 285.062 kb on - strand at 285.065 kb on + strand at 285.066 kb on - strand at 285.268 kb on + strand at 285.328 kb on + strand at 285.403 kb on + strand at 285.404 kb on - strand at 285.404 kb on - strand at 285.405 kb on + strand at 285.406 kb on - strand at 285.407 kb on + strand at 285.408 kb on - strand at 285.408 kb on - strand at 285.413 kb on - strand at 285.414 kb on + strand at 285.415 kb on - strand at 285.482 kb on + strand at 285.482 kb on + strand at 285.483 kb on - strand at 285.488 kb on - strand at 285.538 kb on + strand at 285.538 kb on + strand at 285.545 kb on - strand at 285.615 kb on + strand at 285.625 kb on + strand at 285.628 kb on + strand at 285.638 kb on + strand at 285.639 kb on - strand at 285.789 kb on + strand, within HMPREF1181_RS11410 at 285.795 kb on + strand, within HMPREF1181_RS11410 at 285.795 kb on + strand, within HMPREF1181_RS11410 at 285.796 kb on - strand, within HMPREF1181_RS11410 at 285.796 kb on - strand, within HMPREF1181_RS11410 at 285.872 kb on + strand, within HMPREF1181_RS11410 at 285.873 kb on - strand, within HMPREF1181_RS11410 at 285.977 kb on + strand, within HMPREF1181_RS11410 at 285.978 kb on - strand, within HMPREF1181_RS11410 at 286.205 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 282,171 + HMPREF1181_RS11395 0.46 -1.8 282,174 - HMPREF1181_RS11395 0.46 -0.5 282,174 - HMPREF1181_RS11395 0.46 -0.5 282,204 + HMPREF1181_RS11395 0.50 -0.4 282,260 + HMPREF1181_RS11395 0.56 +1.2 282,346 - HMPREF1181_RS11395 0.67 -2.4 282,352 + HMPREF1181_RS11395 0.67 +1.0 282,409 + HMPREF1181_RS11395 0.74 +0.1 282,432 + HMPREF1181_RS11395 0.77 +0.2 282,433 - HMPREF1181_RS11395 0.77 -0.4 282,451 + HMPREF1181_RS11395 0.79 +0.3 282,626 + -0.9 282,627 - +0.2 282,782 + -0.9 282,782 + -0.4 282,783 - +0.1 282,784 + -0.4 282,785 - -2.5 282,840 - HMPREF1181_RS11400 0.12 +0.4 282,854 - HMPREF1181_RS11400 0.16 +0.8 283,040 + HMPREF1181_RS11400 0.60 -1.2 283,074 + HMPREF1181_RS11400 0.68 +1.0 283,190 + -0.8 283,204 - +0.3 283,204 - -0.5 283,306 + -0.4 283,331 - -0.1 283,436 + HMPREF1181_RS11405 0.13 -0.5 283,600 + HMPREF1181_RS11405 0.21 -0.3 283,697 - HMPREF1181_RS11405 0.26 +0.1 283,729 + HMPREF1181_RS11405 0.27 +0.4 283,729 + HMPREF1181_RS11405 0.27 -1.8 284,051 + HMPREF1181_RS11405 0.43 +0.6 284,117 + HMPREF1181_RS11405 0.46 +0.3 284,117 + HMPREF1181_RS11405 0.46 +0.2 284,117 + HMPREF1181_RS11405 0.46 +0.5 284,118 - HMPREF1181_RS11405 0.46 -0.7 284,194 - HMPREF1181_RS11405 0.50 +2.2 284,208 + HMPREF1181_RS11405 0.50 -0.7 284,265 + HMPREF1181_RS11405 0.53 -1.8 284,347 + HMPREF1181_RS11405 0.57 +0.3 284,348 - HMPREF1181_RS11405 0.57 -0.0 284,401 - HMPREF1181_RS11405 0.60 +0.0 284,452 + HMPREF1181_RS11405 0.62 +0.6 284,492 + HMPREF1181_RS11405 0.64 -0.5 284,493 - HMPREF1181_RS11405 0.64 -1.2 284,737 + HMPREF1181_RS11405 0.76 -3.1 284,737 + HMPREF1181_RS11405 0.76 -2.5 284,738 - HMPREF1181_RS11405 0.76 -0.9 284,738 - HMPREF1181_RS11405 0.76 +1.0 284,832 + HMPREF1181_RS11405 0.81 -0.3 284,876 + HMPREF1181_RS11405 0.83 +0.6 284,962 + HMPREF1181_RS11405 0.87 -0.7 285,061 + -0.7 285,061 + -0.6 285,062 - +0.4 285,065 + -1.4 285,066 - -0.6 285,268 + -0.1 285,328 + -0.0 285,403 + +0.3 285,404 - +1.2 285,404 - -0.3 285,405 + +0.5 285,406 - +0.3 285,407 + +0.5 285,408 - +1.1 285,408 - +0.8 285,413 - +0.1 285,414 + -0.3 285,415 - -2.7 285,482 + +1.3 285,482 + +0.1 285,483 - -1.0 285,488 - +0.4 285,538 + +1.9 285,538 + -0.8 285,545 - +1.1 285,615 + -0.7 285,625 + -2.5 285,628 + +0.1 285,638 + +1.1 285,639 - +0.3 285,789 + HMPREF1181_RS11410 0.29 +0.8 285,795 + HMPREF1181_RS11410 0.30 +0.7 285,795 + HMPREF1181_RS11410 0.30 +0.9 285,796 - HMPREF1181_RS11410 0.30 +0.5 285,796 - HMPREF1181_RS11410 0.30 -1.2 285,872 + HMPREF1181_RS11410 0.45 -0.3 285,873 - HMPREF1181_RS11410 0.45 +0.2 285,977 + HMPREF1181_RS11410 0.65 -0.8 285,978 - HMPREF1181_RS11410 0.65 +0.5 286,205 - +0.8
Or see this region's nucleotide sequence