Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS07850 and HMPREF1181_RS07855 are separated by 5 nucleotides HMPREF1181_RS07855 and HMPREF1181_RS07860 are separated by 48 nucleotides HMPREF1181_RS07860 and HMPREF1181_RS07865 overlap by 4 nucleotides HMPREF1181_RS07865 and HMPREF1181_RS07870 are separated by 111 nucleotides
HMPREF1181_RS07850: HMPREF1181_RS07850 - hypothetical protein, at 68,660 to 69,091
_RS07850
HMPREF1181_RS07855: HMPREF1181_RS07855 - nicotinate-nucleotide adenylyltransferase, at 69,097 to 69,663
_RS07855
HMPREF1181_RS07860: HMPREF1181_RS07860 - hypothetical protein, at 69,712 to 69,921
_RS07860
HMPREF1181_RS07865: HMPREF1181_RS07865 - guanylate kinase, at 69,918 to 70,481
_RS07865
HMPREF1181_RS07870: HMPREF1181_RS07870 - YicC family protein, at 70,593 to 71,471
_RS07870
Position (kb) 69
70
71 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 68.999 kb on + strand, within HMPREF1181_RS07850 at 69.004 kb on - strand, within HMPREF1181_RS07850 at 69.047 kb on + strand, within HMPREF1181_RS07850 at 69.047 kb on + strand, within HMPREF1181_RS07850 at 69.047 kb on + strand, within HMPREF1181_RS07850 at 69.048 kb on - strand at 69.094 kb on - strand at 69.751 kb on - strand, within HMPREF1181_RS07860 at 69.859 kb on - strand, within HMPREF1181_RS07860 at 70.515 kb on - strand at 70.537 kb on - strand at 70.595 kb on - strand at 70.595 kb on - strand at 70.740 kb on - strand, within HMPREF1181_RS07870 at 70.740 kb on - strand, within HMPREF1181_RS07870 at 70.835 kb on - strand, within HMPREF1181_RS07870 at 70.838 kb on - strand, within HMPREF1181_RS07870 at 70.842 kb on - strand, within HMPREF1181_RS07870 at 70.842 kb on - strand, within HMPREF1181_RS07870 at 71.035 kb on - strand, within HMPREF1181_RS07870 at 71.472 kb on - strand at 71.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 68,999 + HMPREF1181_RS07850 0.78 -1.6 69,004 - HMPREF1181_RS07850 0.80 +0.5 69,047 + HMPREF1181_RS07850 0.90 +1.2 69,047 + HMPREF1181_RS07850 0.90 -0.8 69,047 + HMPREF1181_RS07850 0.90 +1.5 69,048 - +1.2 69,094 - -0.5 69,751 - HMPREF1181_RS07860 0.19 +1.0 69,859 - HMPREF1181_RS07860 0.70 -3.1 70,515 - +0.0 70,537 - +0.4 70,595 - -1.7 70,595 - -0.1 70,740 - HMPREF1181_RS07870 0.17 +0.2 70,740 - HMPREF1181_RS07870 0.17 +0.7 70,835 - HMPREF1181_RS07870 0.28 -0.0 70,838 - HMPREF1181_RS07870 0.28 -3.4 70,842 - HMPREF1181_RS07870 0.28 -0.2 70,842 - HMPREF1181_RS07870 0.28 -1.2 71,035 - HMPREF1181_RS07870 0.50 -0.6 71,472 - -0.1 71,479 - -1.2
Or see this region's nucleotide sequence