Experiment: Mucin from porcine stomach type II 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02080 and HMPREF1181_RS02085 overlap by 11 nucleotides HMPREF1181_RS02085 and HMPREF1181_RS02090 overlap by 1 nucleotides HMPREF1181_RS02090 and HMPREF1181_RS02095 are separated by 91 nucleotides
HMPREF1181_RS02080: HMPREF1181_RS02080 - deoxyribose-phosphate aldolase, at 512,289 to 513,191
_RS02080
HMPREF1181_RS02085: HMPREF1181_RS02085 - nucleotide pyrophosphohydrolase, at 513,181 to 513,516
_RS02085
HMPREF1181_RS02090: HMPREF1181_RS02090 - D-tyrosyl-tRNA(Tyr) deacylase, at 513,516 to 513,968
_RS02090
HMPREF1181_RS02095: HMPREF1181_RS02095 - excinuclease ABC subunit UvrC, at 514,060 to 515,880
_RS02095
Position (kb) 513
514 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 512.587 kb on + strand, within HMPREF1181_RS02080 at 512.716 kb on + strand, within HMPREF1181_RS02080 at 512.748 kb on + strand, within HMPREF1181_RS02080 at 512.748 kb on + strand, within HMPREF1181_RS02080 at 512.758 kb on - strand, within HMPREF1181_RS02080 at 512.800 kb on - strand, within HMPREF1181_RS02080 at 512.879 kb on + strand, within HMPREF1181_RS02080 at 512.890 kb on - strand, within HMPREF1181_RS02080 at 512.910 kb on + strand, within HMPREF1181_RS02080 at 512.910 kb on + strand, within HMPREF1181_RS02080 at 512.911 kb on - strand, within HMPREF1181_RS02080 at 513.006 kb on - strand, within HMPREF1181_RS02080 at 513.139 kb on + strand at 513.140 kb on - strand at 513.161 kb on - strand at 513.161 kb on - strand at 513.204 kb on + strand at 513.216 kb on + strand, within HMPREF1181_RS02085 at 513.216 kb on + strand, within HMPREF1181_RS02085 at 513.217 kb on - strand, within HMPREF1181_RS02085 at 513.380 kb on + strand, within HMPREF1181_RS02085 at 513.460 kb on + strand, within HMPREF1181_RS02085 at 513.461 kb on - strand, within HMPREF1181_RS02085 at 513.461 kb on - strand, within HMPREF1181_RS02085 at 513.461 kb on - strand, within HMPREF1181_RS02085 at 513.518 kb on - strand at 513.573 kb on + strand, within HMPREF1181_RS02090 at 513.573 kb on + strand, within HMPREF1181_RS02090 at 513.582 kb on - strand, within HMPREF1181_RS02090 at 513.602 kb on + strand, within HMPREF1181_RS02090 at 513.607 kb on - strand, within HMPREF1181_RS02090 at 513.607 kb on - strand, within HMPREF1181_RS02090 at 513.691 kb on + strand, within HMPREF1181_RS02090 at 513.691 kb on + strand, within HMPREF1181_RS02090 at 513.692 kb on - strand, within HMPREF1181_RS02090 at 513.732 kb on - strand, within HMPREF1181_RS02090 at 513.779 kb on + strand, within HMPREF1181_RS02090 at 513.780 kb on - strand, within HMPREF1181_RS02090 at 513.786 kb on - strand, within HMPREF1181_RS02090 at 513.871 kb on - strand, within HMPREF1181_RS02090 at 513.887 kb on + strand, within HMPREF1181_RS02090 at 513.888 kb on - strand, within HMPREF1181_RS02090 at 513.954 kb on + strand at 513.955 kb on - strand at 513.957 kb on - strand at 513.960 kb on + strand at 513.961 kb on - strand at 513.973 kb on + strand at 514.061 kb on + strand at 514.228 kb on + strand at 514.229 kb on - strand at 514.279 kb on + strand, within HMPREF1181_RS02095 at 514.279 kb on + strand, within HMPREF1181_RS02095 at 514.292 kb on - strand, within HMPREF1181_RS02095 at 514.479 kb on + strand, within HMPREF1181_RS02095 at 514.479 kb on + strand, within HMPREF1181_RS02095 at 514.534 kb on + strand, within HMPREF1181_RS02095 at 514.534 kb on + strand, within HMPREF1181_RS02095 at 514.535 kb on - strand, within HMPREF1181_RS02095 at 514.588 kb on - strand, within HMPREF1181_RS02095 at 514.589 kb on + strand, within HMPREF1181_RS02095 at 514.589 kb on + strand, within HMPREF1181_RS02095 at 514.589 kb on + strand, within HMPREF1181_RS02095 at 514.799 kb on + strand, within HMPREF1181_RS02095
Per-strain Table
Position Strand Gene LocusTag Fraction Mucin from porcine stomach type II 2.5 mg/ml (C) remove 512,587 + HMPREF1181_RS02080 0.33 -4.2 512,716 + HMPREF1181_RS02080 0.47 -0.6 512,748 + HMPREF1181_RS02080 0.51 -0.6 512,748 + HMPREF1181_RS02080 0.51 +0.2 512,758 - HMPREF1181_RS02080 0.52 -0.5 512,800 - HMPREF1181_RS02080 0.57 +0.4 512,879 + HMPREF1181_RS02080 0.65 -0.3 512,890 - HMPREF1181_RS02080 0.67 -1.3 512,910 + HMPREF1181_RS02080 0.69 -2.9 512,910 + HMPREF1181_RS02080 0.69 +0.8 512,911 - HMPREF1181_RS02080 0.69 -0.3 513,006 - HMPREF1181_RS02080 0.79 -2.2 513,139 + -1.6 513,140 - -1.1 513,161 - -1.5 513,161 - +0.1 513,204 + -0.2 513,216 + HMPREF1181_RS02085 0.10 -0.9 513,216 + HMPREF1181_RS02085 0.10 -3.0 513,217 - HMPREF1181_RS02085 0.11 -0.2 513,380 + HMPREF1181_RS02085 0.59 -0.3 513,460 + HMPREF1181_RS02085 0.83 -0.2 513,461 - HMPREF1181_RS02085 0.83 -0.9 513,461 - HMPREF1181_RS02085 0.83 -1.6 513,461 - HMPREF1181_RS02085 0.83 +0.9 513,518 - +0.1 513,573 + HMPREF1181_RS02090 0.13 -0.4 513,573 + HMPREF1181_RS02090 0.13 -0.2 513,582 - HMPREF1181_RS02090 0.15 -1.9 513,602 + HMPREF1181_RS02090 0.19 -0.2 513,607 - HMPREF1181_RS02090 0.20 +0.8 513,607 - HMPREF1181_RS02090 0.20 -0.5 513,691 + HMPREF1181_RS02090 0.39 -0.9 513,691 + HMPREF1181_RS02090 0.39 -1.0 513,692 - HMPREF1181_RS02090 0.39 -0.0 513,732 - HMPREF1181_RS02090 0.48 +0.7 513,779 + HMPREF1181_RS02090 0.58 -0.1 513,780 - HMPREF1181_RS02090 0.58 +0.2 513,786 - HMPREF1181_RS02090 0.60 +0.4 513,871 - HMPREF1181_RS02090 0.78 +0.4 513,887 + HMPREF1181_RS02090 0.82 -0.7 513,888 - HMPREF1181_RS02090 0.82 -0.1 513,954 + -0.9 513,955 - +0.6 513,957 - +1.1 513,960 + -1.2 513,961 - -0.5 513,973 + -0.2 514,061 + -0.2 514,228 + -0.2 514,229 - +1.4 514,279 + HMPREF1181_RS02095 0.12 +0.3 514,279 + HMPREF1181_RS02095 0.12 +0.4 514,292 - HMPREF1181_RS02095 0.13 -1.4 514,479 + HMPREF1181_RS02095 0.23 -0.7 514,479 + HMPREF1181_RS02095 0.23 -0.6 514,534 + HMPREF1181_RS02095 0.26 +2.0 514,534 + HMPREF1181_RS02095 0.26 -0.2 514,535 - HMPREF1181_RS02095 0.26 -0.3 514,588 - HMPREF1181_RS02095 0.29 +0.0 514,589 + HMPREF1181_RS02095 0.29 +0.7 514,589 + HMPREF1181_RS02095 0.29 +1.5 514,589 + HMPREF1181_RS02095 0.29 +0.3 514,799 + HMPREF1181_RS02095 0.41 +0.8
Or see this region's nucleotide sequence