Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ynbC and ynbB are separated by 15 nucleotides ynbB and pgsA overlap by 1 nucleotides pgsA and ydbD are separated by 170 nucleotides
BNILDI_17860: ynbC - Uncharacterized protein YnbC, at 3,593,581 to 3,595,338
ynbC
BNILDI_17865: ynbB - Uncharacterized protein YnbB, at 3,595,354 to 3,596,250
ynbB
BNILDI_17870: pgsA - CDP-alcohol phosphatidyltransferase, at 3,596,250 to 3,596,855
pgsA
BNILDI_17875: ydbD - Uncharacterized protein YdbD, at 3,597,026 to 3,599,332
ydbD
Position (kb)
3595
3596
3597 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3594.367 kb on - strand, within ynbC at 3594.465 kb on - strand, within ynbC at 3594.494 kb on - strand, within ynbC at 3594.502 kb on - strand, within ynbC at 3594.504 kb on + strand, within ynbC at 3594.601 kb on - strand, within ynbC at 3594.647 kb on + strand, within ynbC at 3594.647 kb on + strand, within ynbC at 3594.648 kb on - strand, within ynbC at 3594.648 kb on - strand, within ynbC at 3594.648 kb on - strand, within ynbC at 3594.648 kb on - strand, within ynbC at 3594.708 kb on + strand, within ynbC at 3594.709 kb on - strand, within ynbC at 3594.709 kb on - strand, within ynbC at 3594.899 kb on + strand, within ynbC at 3594.900 kb on - strand, within ynbC at 3594.912 kb on + strand, within ynbC at 3594.957 kb on - strand, within ynbC at 3595.099 kb on - strand, within ynbC at 3595.148 kb on + strand, within ynbC at 3595.149 kb on - strand, within ynbC at 3595.192 kb on + strand at 3595.193 kb on - strand at 3595.698 kb on - strand, within ynbB at 3596.017 kb on - strand, within ynbB at 3596.791 kb on + strand, within pgsA at 3596.814 kb on + strand at 3596.948 kb on + strand at 3597.170 kb on + strand at 3597.170 kb on + strand at 3597.171 kb on - strand at 3597.193 kb on + strand at 3597.239 kb on + strand at 3597.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 3,594,367 - ynbC BNILDI_17860 0.45 -0.2 3,594,465 - ynbC BNILDI_17860 0.50 -0.8 3,594,494 - ynbC BNILDI_17860 0.52 -0.5 3,594,502 - ynbC BNILDI_17860 0.52 -0.0 3,594,504 + ynbC BNILDI_17860 0.53 -0.3 3,594,601 - ynbC BNILDI_17860 0.58 -0.5 3,594,647 + ynbC BNILDI_17860 0.61 -0.5 3,594,647 + ynbC BNILDI_17860 0.61 +0.8 3,594,648 - ynbC BNILDI_17860 0.61 -0.5 3,594,648 - ynbC BNILDI_17860 0.61 +0.5 3,594,648 - ynbC BNILDI_17860 0.61 -0.4 3,594,648 - ynbC BNILDI_17860 0.61 -0.0 3,594,708 + ynbC BNILDI_17860 0.64 -0.2 3,594,709 - ynbC BNILDI_17860 0.64 +1.3 3,594,709 - ynbC BNILDI_17860 0.64 -1.7 3,594,899 + ynbC BNILDI_17860 0.75 +1.1 3,594,900 - ynbC BNILDI_17860 0.75 -1.0 3,594,912 + ynbC BNILDI_17860 0.76 +0.5 3,594,957 - ynbC BNILDI_17860 0.78 -0.0 3,595,099 - ynbC BNILDI_17860 0.86 -0.8 3,595,148 + ynbC BNILDI_17860 0.89 -1.3 3,595,149 - ynbC BNILDI_17860 0.89 +0.5 3,595,192 + +0.5 3,595,193 - +1.5 3,595,698 - ynbB BNILDI_17865 0.38 -2.1 3,596,017 - ynbB BNILDI_17865 0.74 +0.5 3,596,791 + pgsA BNILDI_17870 0.89 +0.8 3,596,814 + +2.8 3,596,948 + +1.8 3,597,170 + -0.4 3,597,170 + -0.3 3,597,171 - -0.8 3,597,193 + -1.7 3,597,239 + +1.6 3,597,240 - +0.0
Or see this region's nucleotide sequence