Strain Fitness in Escherichia coli ECRC62 around BNILDI_17865

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynbC and ynbB are separated by 15 nucleotidesynbB and pgsA overlap by 1 nucleotidespgsA and ydbD are separated by 170 nucleotides BNILDI_17860: ynbC - Uncharacterized protein YnbC, at 3,593,581 to 3,595,338 ynbC BNILDI_17865: ynbB - Uncharacterized protein YnbB, at 3,595,354 to 3,596,250 ynbB BNILDI_17870: pgsA - CDP-alcohol phosphatidyltransferase, at 3,596,250 to 3,596,855 pgsA BNILDI_17875: ydbD - Uncharacterized protein YdbD, at 3,597,026 to 3,599,332 ydbD Position (kb) 3595 3596 3597Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3594.367 kb on - strand, within ynbCat 3594.465 kb on - strand, within ynbCat 3594.494 kb on - strand, within ynbCat 3594.502 kb on - strand, within ynbCat 3594.504 kb on + strand, within ynbCat 3594.601 kb on - strand, within ynbCat 3594.647 kb on + strand, within ynbCat 3594.647 kb on + strand, within ynbCat 3594.648 kb on - strand, within ynbCat 3594.648 kb on - strand, within ynbCat 3594.648 kb on - strand, within ynbCat 3594.648 kb on - strand, within ynbCat 3594.708 kb on + strand, within ynbCat 3594.709 kb on - strand, within ynbCat 3594.709 kb on - strand, within ynbCat 3594.899 kb on + strand, within ynbCat 3594.900 kb on - strand, within ynbCat 3594.912 kb on + strand, within ynbCat 3594.957 kb on - strand, within ynbCat 3595.099 kb on - strand, within ynbCat 3595.148 kb on + strand, within ynbCat 3595.149 kb on - strand, within ynbCat 3595.192 kb on + strandat 3595.193 kb on - strandat 3595.698 kb on - strand, within ynbBat 3596.017 kb on - strand, within ynbBat 3596.791 kb on + strand, within pgsAat 3596.814 kb on + strandat 3596.948 kb on + strandat 3597.170 kb on + strandat 3597.170 kb on + strandat 3597.171 kb on - strandat 3597.193 kb on + strandat 3597.239 kb on + strandat 3597.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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3,594,367 - ynbC BNILDI_17860 0.45 -0.2
3,594,465 - ynbC BNILDI_17860 0.50 -0.8
3,594,494 - ynbC BNILDI_17860 0.52 -0.5
3,594,502 - ynbC BNILDI_17860 0.52 -0.0
3,594,504 + ynbC BNILDI_17860 0.53 -0.3
3,594,601 - ynbC BNILDI_17860 0.58 -0.5
3,594,647 + ynbC BNILDI_17860 0.61 -0.5
3,594,647 + ynbC BNILDI_17860 0.61 +0.8
3,594,648 - ynbC BNILDI_17860 0.61 -0.5
3,594,648 - ynbC BNILDI_17860 0.61 +0.5
3,594,648 - ynbC BNILDI_17860 0.61 -0.4
3,594,648 - ynbC BNILDI_17860 0.61 -0.0
3,594,708 + ynbC BNILDI_17860 0.64 -0.2
3,594,709 - ynbC BNILDI_17860 0.64 +1.3
3,594,709 - ynbC BNILDI_17860 0.64 -1.7
3,594,899 + ynbC BNILDI_17860 0.75 +1.1
3,594,900 - ynbC BNILDI_17860 0.75 -1.0
3,594,912 + ynbC BNILDI_17860 0.76 +0.5
3,594,957 - ynbC BNILDI_17860 0.78 -0.0
3,595,099 - ynbC BNILDI_17860 0.86 -0.8
3,595,148 + ynbC BNILDI_17860 0.89 -1.3
3,595,149 - ynbC BNILDI_17860 0.89 +0.5
3,595,192 + +0.5
3,595,193 - +1.5
3,595,698 - ynbB BNILDI_17865 0.38 -2.1
3,596,017 - ynbB BNILDI_17865 0.74 +0.5
3,596,791 + pgsA BNILDI_17870 0.89 +0.8
3,596,814 + +2.8
3,596,948 + +1.8
3,597,170 + -0.4
3,597,170 + -0.3
3,597,171 - -0.8
3,597,193 + -1.7
3,597,239 + +1.6
3,597,240 - +0.0

Or see this region's nucleotide sequence