Strain Fitness in Escherichia coli ECRC62 around BNILDI_13935

Experiment: RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfruB and fruB overlap by 1 nucleotidesfruB and fruA are separated by 16 nucleotides BNILDI_13930: fruB - fused PTS fructose transporter subunit IIA/HPr protein, at 2,803,847 to 2,804,977 fruB BNILDI_13935: fruB - fused PTS fructose transporter subunit IIA/HPr protein, at 2,804,977 to 2,805,915 fruB BNILDI_13940: fruA - PTS fructose transporter subunit IIBC, at 2,805,932 to 2,807,623 fruA Position (kb) 2804 2805 2806Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2804.018 kb on - strand, within fruBat 2804.126 kb on + strand, within fruBat 2804.127 kb on - strand, within fruBat 2804.127 kb on - strand, within fruBat 2804.446 kb on + strand, within fruBat 2804.447 kb on - strand, within fruBat 2804.620 kb on + strand, within fruBat 2804.842 kb on + strand, within fruBat 2804.994 kb on + strandat 2804.997 kb on + strandat 2805.252 kb on + strand, within fruBat 2805.494 kb on + strand, within fruBat 2805.497 kb on + strand, within fruBat 2805.624 kb on + strand, within fruBat 2805.639 kb on + strand, within fruBat 2805.910 kb on - strandat 2805.981 kb on - strandat 2806.249 kb on - strand, within fruAat 2806.249 kb on - strand, within fruAat 2806.472 kb on + strand, within fruAat 2806.472 kb on + strand, within fruAat 2806.473 kb on - strand, within fruAat 2806.589 kb on - strand, within fruAat 2806.637 kb on + strand, within fruAat 2806.637 kb on + strand, within fruAat 2806.637 kb on + strand, within fruAat 2806.637 kb on + strand, within fruAat 2806.638 kb on - strand, within fruAat 2806.793 kb on + strand, within fruAat 2806.794 kb on - strand, within fruAat 2806.794 kb on - strand, within fruAat 2806.889 kb on - strand, within fruAat 2806.892 kb on - strand, within fruAat 2806.892 kb on - strand, within fruAat 2806.914 kb on - strand, within fruA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RB68
remove
2,804,018 - fruB BNILDI_13930 0.15 +0.5
2,804,126 + fruB BNILDI_13930 0.25 +1.8
2,804,127 - fruB BNILDI_13930 0.25 +0.2
2,804,127 - fruB BNILDI_13930 0.25 +1.2
2,804,446 + fruB BNILDI_13930 0.53 +0.8
2,804,447 - fruB BNILDI_13930 0.53 -0.7
2,804,620 + fruB BNILDI_13930 0.68 +0.8
2,804,842 + fruB BNILDI_13930 0.88 +1.2
2,804,994 + -1.2
2,804,997 + -1.8
2,805,252 + fruB BNILDI_13935 0.29 -0.8
2,805,494 + fruB BNILDI_13935 0.55 +0.2
2,805,497 + fruB BNILDI_13935 0.55 -1.4
2,805,624 + fruB BNILDI_13935 0.69 -2.1
2,805,639 + fruB BNILDI_13935 0.71 +0.8
2,805,910 - -0.4
2,805,981 - -1.6
2,806,249 - fruA BNILDI_13940 0.19 +2.8
2,806,249 - fruA BNILDI_13940 0.19 -1.6
2,806,472 + fruA BNILDI_13940 0.32 +2.0
2,806,472 + fruA BNILDI_13940 0.32 +0.5
2,806,473 - fruA BNILDI_13940 0.32 -0.5
2,806,589 - fruA BNILDI_13940 0.39 -0.2
2,806,637 + fruA BNILDI_13940 0.42 +1.2
2,806,637 + fruA BNILDI_13940 0.42 -1.1
2,806,637 + fruA BNILDI_13940 0.42 -0.6
2,806,637 + fruA BNILDI_13940 0.42 -1.9
2,806,638 - fruA BNILDI_13940 0.42 +0.8
2,806,793 + fruA BNILDI_13940 0.51 +0.9
2,806,794 - fruA BNILDI_13940 0.51 -0.9
2,806,794 - fruA BNILDI_13940 0.51 -0.5
2,806,889 - fruA BNILDI_13940 0.57 -0.2
2,806,892 - fruA BNILDI_13940 0.57 -0.5
2,806,892 - fruA BNILDI_13940 0.57 -0.8
2,806,914 - fruA BNILDI_13940 0.58 +1.8

Or see this region's nucleotide sequence