Strain Fitness in Escherichia coli ECRC62 around BNILDI_11895

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrnc and era overlap by 4 nucleotidesera and recO are separated by 11 nucleotidesrecO and pdxJ are separated by 11 nucleotidespdxJ and BNILDI_11905 overlap by 1 nucleotides BNILDI_11885: rnc - ribonuclease III, at 2,381,635 to 2,382,315 rnc BNILDI_11890: era - GTPase Era, at 2,382,312 to 2,383,217 era BNILDI_11895: recO - DNA repair protein RecO, at 2,383,229 to 2,383,957 recO BNILDI_11900: pdxJ - pyridoxine 5'-phosphate synthase, at 2,383,969 to 2,384,700 pdxJ BNILDI_11905: BNILDI_11905 - Holo-[acyl-carrier-protein] synthase, at 2,384,700 to 2,385,080 _11905 Position (kb) 2383 2384Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 2383.261 kb on + strandat 2383.487 kb on + strand, within recOat 2383.499 kb on + strand, within recOat 2383.499 kb on + strand, within recOat 2383.500 kb on - strand, within recOat 2383.500 kb on - strand, within recOat 2383.658 kb on + strand, within recOat 2383.718 kb on + strand, within recOat 2383.769 kb on - strand, within recOat 2383.791 kb on + strand, within recOat 2383.791 kb on + strand, within recOat 2383.791 kb on + strand, within recOat 2383.792 kb on - strand, within recOat 2383.868 kb on - strand, within recOat 2383.875 kb on - strand, within recOat 2383.921 kb on + strandat 2383.979 kb on + strandat 2384.367 kb on + strand, within pdxJat 2384.443 kb on + strand, within pdxJ

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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2,383,261 + -0.9
2,383,487 + recO BNILDI_11895 0.35 -4.9
2,383,499 + recO BNILDI_11895 0.37 +0.3
2,383,499 + recO BNILDI_11895 0.37 +2.0
2,383,500 - recO BNILDI_11895 0.37 -0.7
2,383,500 - recO BNILDI_11895 0.37 -0.1
2,383,658 + recO BNILDI_11895 0.59 +1.1
2,383,718 + recO BNILDI_11895 0.67 +0.2
2,383,769 - recO BNILDI_11895 0.74 +0.7
2,383,791 + recO BNILDI_11895 0.77 -0.5
2,383,791 + recO BNILDI_11895 0.77 +0.6
2,383,791 + recO BNILDI_11895 0.77 -0.7
2,383,792 - recO BNILDI_11895 0.77 -1.6
2,383,868 - recO BNILDI_11895 0.88 +1.8
2,383,875 - recO BNILDI_11895 0.89 +1.3
2,383,921 + +1.3
2,383,979 + -0.1
2,384,367 + pdxJ BNILDI_11900 0.54 +1.7
2,384,443 + pdxJ BNILDI_11900 0.65 +3.0

Or see this region's nucleotide sequence