Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_09510 and BNILDI_09515 are separated by 45 nucleotides BNILDI_09515 and zorE are separated by 245 nucleotides zorE and zorB are separated by 3 nucleotides zorB and zorA are separated by 6 nucleotides
BNILDI_09510: BNILDI_09510 - IS5-like element ISKpn26 family transposase, at 1,897,791 to 1,898,771
_09510
BNILDI_09515: BNILDI_09515 - N-acetylneuraminate epimerase, at 1,898,817 to 1,899,080
_09515
BNILDI_09520: zorE - Zorya protein ZorE, at 1,899,326 to 1,900,429
zorE
BNILDI_09525: zorB - Zorya protein ZorB, at 1,900,433 to 1,901,140
zorB
BNILDI_09530: zorA - Zorya protein ZorA, at 1,901,147 to 1,902,799
zorA
Position (kb) 1899
1900
1901 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1898.638 kb on + strand, within BNILDI_09510 at 1898.815 kb on + strand at 1898.909 kb on - strand, within BNILDI_09515 at 1899.156 kb on + strand at 1899.188 kb on + strand at 1899.201 kb on + strand at 1899.202 kb on - strand at 1899.388 kb on - strand at 1899.638 kb on - strand, within zorE at 1899.663 kb on - strand, within zorE at 1899.665 kb on - strand, within zorE at 1899.994 kb on + strand, within zorE at 1900.025 kb on + strand, within zorE at 1900.085 kb on + strand, within zorE at 1900.225 kb on + strand, within zorE at 1900.229 kb on + strand, within zorE at 1900.251 kb on + strand, within zorE at 1900.291 kb on + strand, within zorE at 1900.821 kb on - strand, within zorB at 1900.844 kb on + strand, within zorB at 1901.009 kb on + strand, within zorB at 1901.010 kb on - strand, within zorB at 1901.023 kb on - strand, within zorB at 1901.033 kb on + strand, within zorB at 1901.271 kb on - strand at 1901.399 kb on - strand, within zorA at 1901.428 kb on + strand, within zorA at 1901.429 kb on - strand, within zorA
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 1,898,638 + BNILDI_09510 0.86 -0.6 1,898,815 + -0.1 1,898,909 - BNILDI_09515 0.35 -0.4 1,899,156 + +0.4 1,899,188 + +0.1 1,899,201 + +0.1 1,899,202 - -0.1 1,899,388 - -0.2 1,899,638 - zorE BNILDI_09520 0.28 -0.3 1,899,663 - zorE BNILDI_09520 0.31 -0.9 1,899,665 - zorE BNILDI_09520 0.31 -1.5 1,899,994 + zorE BNILDI_09520 0.61 -1.0 1,900,025 + zorE BNILDI_09520 0.63 -0.3 1,900,085 + zorE BNILDI_09520 0.69 +0.7 1,900,225 + zorE BNILDI_09520 0.81 -1.2 1,900,229 + zorE BNILDI_09520 0.82 -0.1 1,900,251 + zorE BNILDI_09520 0.84 -2.3 1,900,291 + zorE BNILDI_09520 0.87 -0.3 1,900,821 - zorB BNILDI_09525 0.55 -1.9 1,900,844 + zorB BNILDI_09525 0.58 -0.7 1,901,009 + zorB BNILDI_09525 0.81 -1.6 1,901,010 - zorB BNILDI_09525 0.81 +0.1 1,901,023 - zorB BNILDI_09525 0.83 +0.5 1,901,033 + zorB BNILDI_09525 0.85 +0.7 1,901,271 - -1.6 1,901,399 - zorA BNILDI_09530 0.15 +2.5 1,901,428 + zorA BNILDI_09530 0.17 -1.2 1,901,429 - zorA BNILDI_09530 0.17 -1.4
Or see this region's nucleotide sequence