Strain Fitness in Escherichia coli ECRC62 around BNILDI_08855

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_08840 and BNILDI_08845 overlap by 8 nucleotidesBNILDI_08845 and BNILDI_08850 are separated by 6 nucleotidesBNILDI_08850 and BNILDI_08855 overlap by 4 nucleotidesBNILDI_08855 and BNILDI_08860 are separated by 27 nucleotidesBNILDI_08860 and BNILDI_08865 overlap by 8 nucleotides BNILDI_08840: BNILDI_08840 - host cell division inhibitor Icd-like protein, at 1,773,556 to 1,774,479 _08840 BNILDI_08845: BNILDI_08845 - hypothetical protein, at 1,774,472 to 1,774,792 _08845 BNILDI_08850: BNILDI_08850 - DUF4222 domain-containing protein, at 1,774,799 to 1,775,092 _08850 BNILDI_08855: BNILDI_08855 - Putative prophage primase, at 1,775,089 to 1,776,204 _08855 BNILDI_08860: BNILDI_08860 - Putative head portal protein, at 1,776,232 to 1,777,134 _08860 BNILDI_08865: BNILDI_08865 - Phage terminase large subunit, at 1,777,127 to 1,778,272 _08865 Position (kb) 1775 1776 1777Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1774.230 kb on - strand, within BNILDI_08840at 1774.263 kb on + strand, within BNILDI_08840at 1774.271 kb on + strand, within BNILDI_08840at 1774.271 kb on + strand, within BNILDI_08840at 1774.272 kb on - strand, within BNILDI_08840at 1774.275 kb on + strand, within BNILDI_08840at 1774.275 kb on + strand, within BNILDI_08840at 1774.275 kb on + strand, within BNILDI_08840at 1774.276 kb on - strand, within BNILDI_08840at 1774.276 kb on - strand, within BNILDI_08840at 1774.281 kb on - strand, within BNILDI_08840at 1774.326 kb on + strand, within BNILDI_08840at 1774.327 kb on - strand, within BNILDI_08840at 1774.330 kb on + strand, within BNILDI_08840at 1774.330 kb on + strand, within BNILDI_08840at 1774.331 kb on - strand, within BNILDI_08840at 1774.331 kb on - strand, within BNILDI_08840at 1774.331 kb on - strand, within BNILDI_08840at 1774.333 kb on - strand, within BNILDI_08840at 1774.333 kb on - strand, within BNILDI_08840at 1774.333 kb on - strand, within BNILDI_08840at 1774.548 kb on - strand, within BNILDI_08845at 1774.576 kb on + strand, within BNILDI_08845at 1774.578 kb on + strand, within BNILDI_08845at 1774.578 kb on + strand, within BNILDI_08845at 1774.579 kb on - strand, within BNILDI_08845at 1774.579 kb on - strand, within BNILDI_08845at 1774.670 kb on - strand, within BNILDI_08845at 1774.794 kb on + strandat 1774.808 kb on + strandat 1774.868 kb on + strand, within BNILDI_08850at 1775.109 kb on - strandat 1775.389 kb on + strand, within BNILDI_08855at 1775.438 kb on - strand, within BNILDI_08855at 1775.495 kb on + strand, within BNILDI_08855at 1775.516 kb on - strand, within BNILDI_08855at 1775.531 kb on + strand, within BNILDI_08855at 1775.627 kb on + strand, within BNILDI_08855at 1775.627 kb on + strand, within BNILDI_08855at 1775.627 kb on + strand, within BNILDI_08855at 1775.627 kb on + strand, within BNILDI_08855at 1775.645 kb on + strand, within BNILDI_08855at 1775.645 kb on + strand, within BNILDI_08855at 1775.702 kb on + strand, within BNILDI_08855at 1775.776 kb on - strand, within BNILDI_08855at 1775.812 kb on + strand, within BNILDI_08855at 1775.812 kb on + strand, within BNILDI_08855at 1775.844 kb on - strand, within BNILDI_08855at 1775.870 kb on + strand, within BNILDI_08855at 1775.870 kb on + strand, within BNILDI_08855at 1775.871 kb on - strand, within BNILDI_08855at 1775.871 kb on - strand, within BNILDI_08855at 1775.984 kb on - strand, within BNILDI_08855at 1776.215 kb on - strandat 1776.316 kb on + strandat 1776.369 kb on + strand, within BNILDI_08860at 1776.369 kb on + strand, within BNILDI_08860at 1776.369 kb on + strand, within BNILDI_08860at 1776.370 kb on - strand, within BNILDI_08860at 1776.370 kb on - strand, within BNILDI_08860at 1776.370 kb on - strand, within BNILDI_08860at 1776.370 kb on - strand, within BNILDI_08860at 1776.370 kb on - strand, within BNILDI_08860at 1776.370 kb on - strand, within BNILDI_08860at 1776.565 kb on - strand, within BNILDI_08860at 1776.611 kb on + strand, within BNILDI_08860at 1776.611 kb on + strand, within BNILDI_08860at 1776.629 kb on - strand, within BNILDI_08860at 1776.682 kb on + strand, within BNILDI_08860at 1776.771 kb on - strand, within BNILDI_08860at 1776.793 kb on + strand, within BNILDI_08860at 1776.809 kb on - strand, within BNILDI_08860at 1776.995 kb on - strand, within BNILDI_08860at 1777.054 kb on - strandat 1777.159 kb on - strandat 1777.159 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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1,774,230 - BNILDI_08840 0.73 -3.1
1,774,263 + BNILDI_08840 0.77 -1.6
1,774,271 + BNILDI_08840 0.77 +0.0
1,774,271 + BNILDI_08840 0.77 -2.6
1,774,272 - BNILDI_08840 0.77 -1.4
1,774,275 + BNILDI_08840 0.78 +1.2
1,774,275 + BNILDI_08840 0.78 +2.4
1,774,275 + BNILDI_08840 0.78 -0.9
1,774,276 - BNILDI_08840 0.78 -0.4
1,774,276 - BNILDI_08840 0.78 -0.8
1,774,281 - BNILDI_08840 0.78 -1.2
1,774,326 + BNILDI_08840 0.83 -0.5
1,774,327 - BNILDI_08840 0.83 +1.0
1,774,330 + BNILDI_08840 0.84 -1.0
1,774,330 + BNILDI_08840 0.84 -0.9
1,774,331 - BNILDI_08840 0.84 -0.4
1,774,331 - BNILDI_08840 0.84 -0.6
1,774,331 - BNILDI_08840 0.84 +0.3
1,774,333 - BNILDI_08840 0.84 +2.4
1,774,333 - BNILDI_08840 0.84 +0.4
1,774,333 - BNILDI_08840 0.84 +0.1
1,774,548 - BNILDI_08845 0.24 +0.4
1,774,576 + BNILDI_08845 0.32 -2.4
1,774,578 + BNILDI_08845 0.33 +0.0
1,774,578 + BNILDI_08845 0.33 -0.9
1,774,579 - BNILDI_08845 0.33 -1.4
1,774,579 - BNILDI_08845 0.33 +4.8
1,774,670 - BNILDI_08845 0.62 -0.1
1,774,794 + -0.5
1,774,808 + -0.7
1,774,868 + BNILDI_08850 0.23 +0.1
1,775,109 - -0.7
1,775,389 + BNILDI_08855 0.27 +0.0
1,775,438 - BNILDI_08855 0.31 -2.8
1,775,495 + BNILDI_08855 0.36 +1.9
1,775,516 - BNILDI_08855 0.38 +0.1
1,775,531 + BNILDI_08855 0.40 -1.3
1,775,627 + BNILDI_08855 0.48 -1.0
1,775,627 + BNILDI_08855 0.48 -0.2
1,775,627 + BNILDI_08855 0.48 -2.3
1,775,627 + BNILDI_08855 0.48 -0.7
1,775,645 + BNILDI_08855 0.50 +2.1
1,775,645 + BNILDI_08855 0.50 -0.2
1,775,702 + BNILDI_08855 0.55 -2.0
1,775,776 - BNILDI_08855 0.62 -2.4
1,775,812 + BNILDI_08855 0.65 -0.5
1,775,812 + BNILDI_08855 0.65 -0.8
1,775,844 - BNILDI_08855 0.68 -1.0
1,775,870 + BNILDI_08855 0.70 -1.4
1,775,870 + BNILDI_08855 0.70 -0.5
1,775,871 - BNILDI_08855 0.70 +1.1
1,775,871 - BNILDI_08855 0.70 -2.0
1,775,984 - BNILDI_08855 0.80 -1.3
1,776,215 - -1.3
1,776,316 + -0.5
1,776,369 + BNILDI_08860 0.15 +1.4
1,776,369 + BNILDI_08860 0.15 +1.2
1,776,369 + BNILDI_08860 0.15 +1.7
1,776,370 - BNILDI_08860 0.15 +0.5
1,776,370 - BNILDI_08860 0.15 -1.5
1,776,370 - BNILDI_08860 0.15 -0.7
1,776,370 - BNILDI_08860 0.15 +0.1
1,776,370 - BNILDI_08860 0.15 -0.5
1,776,370 - BNILDI_08860 0.15 -1.2
1,776,565 - BNILDI_08860 0.37 -2.0
1,776,611 + BNILDI_08860 0.42 +0.7
1,776,611 + BNILDI_08860 0.42 -0.2
1,776,629 - BNILDI_08860 0.44 -0.4
1,776,682 + BNILDI_08860 0.50 -0.1
1,776,771 - BNILDI_08860 0.60 -2.5
1,776,793 + BNILDI_08860 0.62 +0.7
1,776,809 - BNILDI_08860 0.64 +0.9
1,776,995 - BNILDI_08860 0.84 -0.7
1,777,054 - -1.5
1,777,159 - +0.2
1,777,159 - +2.4

Or see this region's nucleotide sequence