Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaK and dnaJ are separated by 88 nucleotides dnaJ and mokC are separated by 103 nucleotides mokC and nhaA are separated by 585 nucleotides
BNILDI_08220: dnaK - molecular chaperone DnaK, at 1,640,896 to 1,642,812
dnaK
BNILDI_08230: dnaJ - molecular chaperone DnaJ, at 1,642,901 to 1,644,031
dnaJ
BNILDI_08235: mokC - type I toxin-antitoxin system toxin MokC, at 1,644,135 to 1,644,287
mokC
BNILDI_08245: nhaA - Na+/H+ antiporter NhaA, at 1,644,873 to 1,646,039
nhaA
Position (kb)
1642
1643
1644
1645 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1642.829 kb on + strand at 1642.833 kb on + strand at 1642.833 kb on + strand at 1642.833 kb on + strand at 1642.835 kb on + strand at 1642.882 kb on + strand at 1642.916 kb on + strand at 1642.917 kb on - strand at 1643.255 kb on + strand, within dnaJ at 1643.690 kb on + strand, within dnaJ at 1643.690 kb on + strand, within dnaJ at 1644.088 kb on + strand at 1644.089 kb on - strand at 1644.089 kb on - strand at 1644.242 kb on + strand, within mokC at 1644.242 kb on + strand, within mokC at 1644.242 kb on + strand, within mokC at 1644.276 kb on - strand at 1644.276 kb on - strand at 1644.318 kb on - strand at 1644.329 kb on + strand at 1644.344 kb on + strand at 1644.345 kb on - strand at 1644.346 kb on + strand at 1644.346 kb on + strand at 1644.392 kb on + strand at 1644.392 kb on + strand at 1644.447 kb on - strand at 1644.484 kb on + strand at 1644.598 kb on + strand at 1644.598 kb on + strand at 1644.677 kb on + strand at 1644.678 kb on - strand at 1644.688 kb on + strand at 1644.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 1,642,829 + -0.6 1,642,833 + -1.8 1,642,833 + -0.5 1,642,833 + -1.8 1,642,835 + +2.4 1,642,882 + -0.5 1,642,916 + +0.1 1,642,917 - -1.3 1,643,255 + dnaJ BNILDI_08230 0.31 -0.4 1,643,690 + dnaJ BNILDI_08230 0.70 -0.9 1,643,690 + dnaJ BNILDI_08230 0.70 -1.1 1,644,088 + -1.0 1,644,089 - +1.4 1,644,089 - -0.4 1,644,242 + mokC BNILDI_08235 0.70 +1.4 1,644,242 + mokC BNILDI_08235 0.70 -1.9 1,644,242 + mokC BNILDI_08235 0.70 -0.5 1,644,276 - -0.7 1,644,276 - -2.3 1,644,318 - -0.1 1,644,329 + +0.4 1,644,344 + +0.8 1,644,345 - +1.4 1,644,346 + -0.1 1,644,346 + -1.1 1,644,392 + -1.4 1,644,392 + +0.3 1,644,447 - +1.4 1,644,484 + -1.4 1,644,598 + -0.4 1,644,598 + -1.2 1,644,677 + +0.4 1,644,678 - -0.0 1,644,688 + +0.8 1,644,849 - +2.4
Or see this region's nucleotide sequence