Strain Fitness in Escherichia coli ECRC62 around BNILDI_08230

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaK and dnaJ are separated by 88 nucleotidesdnaJ and mokC are separated by 103 nucleotidesmokC and nhaA are separated by 585 nucleotides BNILDI_08220: dnaK - molecular chaperone DnaK, at 1,640,896 to 1,642,812 dnaK BNILDI_08230: dnaJ - molecular chaperone DnaJ, at 1,642,901 to 1,644,031 dnaJ BNILDI_08235: mokC - type I toxin-antitoxin system toxin MokC, at 1,644,135 to 1,644,287 mokC BNILDI_08245: nhaA - Na+/H+ antiporter NhaA, at 1,644,873 to 1,646,039 nhaA Position (kb) 1642 1643 1644 1645Strain fitness (log2 ratio) -2 -1 0 1 2at 1642.829 kb on + strandat 1642.833 kb on + strandat 1642.833 kb on + strandat 1642.833 kb on + strandat 1642.835 kb on + strandat 1642.882 kb on + strandat 1642.916 kb on + strandat 1642.917 kb on - strandat 1643.255 kb on + strand, within dnaJat 1643.690 kb on + strand, within dnaJat 1643.690 kb on + strand, within dnaJat 1644.088 kb on + strandat 1644.089 kb on - strandat 1644.089 kb on - strandat 1644.242 kb on + strand, within mokCat 1644.242 kb on + strand, within mokCat 1644.242 kb on + strand, within mokCat 1644.276 kb on - strandat 1644.276 kb on - strandat 1644.318 kb on - strandat 1644.329 kb on + strandat 1644.344 kb on + strandat 1644.345 kb on - strandat 1644.346 kb on + strandat 1644.346 kb on + strandat 1644.392 kb on + strandat 1644.392 kb on + strandat 1644.447 kb on - strandat 1644.484 kb on + strandat 1644.598 kb on + strandat 1644.598 kb on + strandat 1644.677 kb on + strandat 1644.678 kb on - strandat 1644.688 kb on + strandat 1644.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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1,642,829 + -0.6
1,642,833 + -1.8
1,642,833 + -0.5
1,642,833 + -1.8
1,642,835 + +2.4
1,642,882 + -0.5
1,642,916 + +0.1
1,642,917 - -1.3
1,643,255 + dnaJ BNILDI_08230 0.31 -0.4
1,643,690 + dnaJ BNILDI_08230 0.70 -0.9
1,643,690 + dnaJ BNILDI_08230 0.70 -1.1
1,644,088 + -1.0
1,644,089 - +1.4
1,644,089 - -0.4
1,644,242 + mokC BNILDI_08235 0.70 +1.4
1,644,242 + mokC BNILDI_08235 0.70 -1.9
1,644,242 + mokC BNILDI_08235 0.70 -0.5
1,644,276 - -0.7
1,644,276 - -2.3
1,644,318 - -0.1
1,644,329 + +0.4
1,644,344 + +0.8
1,644,345 - +1.4
1,644,346 + -0.1
1,644,346 + -1.1
1,644,392 + -1.4
1,644,392 + +0.3
1,644,447 - +1.4
1,644,484 + -1.4
1,644,598 + -0.4
1,644,598 + -1.2
1,644,677 + +0.4
1,644,678 - -0.0
1,644,688 + +0.8
1,644,849 - +2.4

Or see this region's nucleotide sequence