Strain Fitness in Escherichia coli ECRC62 around BNILDI_06825

Experiment: RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgroL and yjeI are separated by 137 nucleotidesyjeI and BNILDI_06825 are separated by 252 nucleotidesBNILDI_06825 and BNILDI_06830 are separated by 248 nucleotides BNILDI_06815: groL - chaperonin GroEL, at 1,365,049 to 1,366,695 groL BNILDI_06820: yjeI - Uncharacterized protein YjeI, at 1,366,833 to 1,367,186 yjeI BNILDI_06825: BNILDI_06825 - IS110-like element IS621 family transposase, at 1,367,439 to 1,368,419 _06825 BNILDI_06830: BNILDI_06830 - Protein, at 1,368,668 to 1,369,537 _06830 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -2 -1 0 1at 1366.693 kb on + strandat 1366.693 kb on + strandat 1366.693 kb on + strandat 1366.694 kb on - strandat 1366.694 kb on - strandat 1366.770 kb on + strandat 1366.771 kb on - strandat 1366.771 kb on - strandat 1366.771 kb on - strandat 1366.774 kb on - strandat 1366.775 kb on + strandat 1366.776 kb on - strandat 1366.776 kb on - strandat 1366.845 kb on + strandat 1366.849 kb on + strandat 1366.890 kb on - strand, within yjeIat 1366.928 kb on - strand, within yjeIat 1366.985 kb on + strand, within yjeIat 1366.986 kb on - strand, within yjeIat 1366.986 kb on - strand, within yjeIat 1367.033 kb on + strand, within yjeIat 1367.094 kb on + strand, within yjeIat 1367.169 kb on + strandat 1367.171 kb on + strandat 1367.172 kb on - strandat 1367.172 kb on - strandat 1367.172 kb on - strandat 1367.172 kb on - strandat 1367.214 kb on + strandat 1367.215 kb on - strandat 1367.215 kb on - strandat 1367.215 kb on - strandat 1367.251 kb on - strandat 1367.251 kb on - strandat 1367.251 kb on - strandat 1367.251 kb on - strandat 1368.669 kb on + strandat 1368.669 kb on + strandat 1368.710 kb on + strandat 1368.710 kb on + strandat 1368.711 kb on - strandat 1368.711 kb on - strandat 1368.729 kb on - strandat 1368.783 kb on + strand, within BNILDI_06830at 1368.784 kb on - strand, within BNILDI_06830at 1369.003 kb on - strand, within BNILDI_06830at 1369.067 kb on - strand, within BNILDI_06830at 1369.074 kb on - strand, within BNILDI_06830at 1369.074 kb on - strand, within BNILDI_06830at 1369.074 kb on - strand, within BNILDI_06830at 1369.157 kb on + strand, within BNILDI_06830at 1369.363 kb on + strand, within BNILDI_06830at 1369.363 kb on + strand, within BNILDI_06830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RB68
remove
1,366,693 + +1.2
1,366,693 + +0.3
1,366,693 + -0.3
1,366,694 - +0.7
1,366,694 - +1.0
1,366,770 + -0.3
1,366,771 - -0.3
1,366,771 - -0.4
1,366,771 - -1.1
1,366,774 - -0.5
1,366,775 + -1.4
1,366,776 - +0.1
1,366,776 - -0.0
1,366,845 + +0.4
1,366,849 + -0.6
1,366,890 - yjeI BNILDI_06820 0.16 +0.7
1,366,928 - yjeI BNILDI_06820 0.27 +0.7
1,366,985 + yjeI BNILDI_06820 0.43 +1.7
1,366,986 - yjeI BNILDI_06820 0.43 -0.6
1,366,986 - yjeI BNILDI_06820 0.43 +0.3
1,367,033 + yjeI BNILDI_06820 0.56 +0.7
1,367,094 + yjeI BNILDI_06820 0.74 -0.7
1,367,169 + +1.5
1,367,171 + -1.3
1,367,172 - +1.0
1,367,172 - -0.3
1,367,172 - -0.6
1,367,172 - -0.3
1,367,214 + +0.1
1,367,215 - -0.1
1,367,215 - -0.8
1,367,215 - +1.4
1,367,251 - +0.8
1,367,251 - -0.7
1,367,251 - -1.9
1,367,251 - -0.2
1,368,669 + -1.5
1,368,669 + -0.5
1,368,710 + -0.5
1,368,710 + -0.6
1,368,711 - +1.3
1,368,711 - -0.2
1,368,729 - +0.7
1,368,783 + BNILDI_06830 0.13 +0.1
1,368,784 - BNILDI_06830 0.13 -1.4
1,369,003 - BNILDI_06830 0.39 -1.6
1,369,067 - BNILDI_06830 0.46 -0.0
1,369,074 - BNILDI_06830 0.47 -1.8
1,369,074 - BNILDI_06830 0.47 +0.3
1,369,074 - BNILDI_06830 0.47 -0.7
1,369,157 + BNILDI_06830 0.56 +0.0
1,369,363 + BNILDI_06830 0.80 -1.3
1,369,363 + BNILDI_06830 0.80 +0.3

Or see this region's nucleotide sequence