Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phnI and phnH overlap by 1 nucleotides phnH and phnG overlap by 4 nucleotides phnG and phnF are separated by 0 nucleotides
BNILDI_06575: phnI - alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI, at 1,314,170 to 1,315,234
phnI
BNILDI_06580: phnH - phosphonate C-P lyase system protein PhnH, at 1,315,234 to 1,315,818
phnH
BNILDI_06585: phnG - phosphonate C-P lyase system protein PhnG, at 1,315,815 to 1,316,267
phnG
BNILDI_06590: phnF - phosphonate metabolism transcriptional regulator PhnF, at 1,316,268 to 1,316,993
phnF
Position (kb)
1315
1316 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1314.234 kb on + strand at 1314.492 kb on - strand, within phnI at 1314.610 kb on - strand, within phnI at 1314.627 kb on + strand, within phnI at 1314.627 kb on + strand, within phnI at 1314.627 kb on + strand, within phnI at 1314.628 kb on - strand, within phnI at 1314.647 kb on + strand, within phnI at 1314.647 kb on + strand, within phnI at 1314.647 kb on + strand, within phnI at 1314.648 kb on - strand, within phnI at 1314.724 kb on + strand, within phnI at 1314.864 kb on + strand, within phnI at 1314.864 kb on + strand, within phnI at 1314.865 kb on - strand, within phnI at 1314.870 kb on + strand, within phnI at 1314.870 kb on + strand, within phnI at 1314.871 kb on - strand, within phnI at 1314.908 kb on - strand, within phnI at 1314.923 kb on - strand, within phnI at 1314.923 kb on - strand, within phnI at 1315.230 kb on + strand at 1315.231 kb on - strand at 1315.231 kb on - strand at 1315.444 kb on + strand, within phnH at 1315.578 kb on + strand, within phnH at 1315.797 kb on + strand at 1315.798 kb on - strand at 1315.798 kb on - strand at 1315.935 kb on + strand, within phnG at 1316.027 kb on - strand, within phnG at 1316.384 kb on + strand, within phnF at 1316.548 kb on + strand, within phnF at 1316.560 kb on - strand, within phnF at 1316.560 kb on - strand, within phnF at 1316.800 kb on - strand, within phnF
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 1,314,234 + +0.5 1,314,492 - phnI BNILDI_06575 0.30 +0.3 1,314,610 - phnI BNILDI_06575 0.41 -0.5 1,314,627 + phnI BNILDI_06575 0.43 -1.4 1,314,627 + phnI BNILDI_06575 0.43 -1.1 1,314,627 + phnI BNILDI_06575 0.43 -0.1 1,314,628 - phnI BNILDI_06575 0.43 +0.3 1,314,647 + phnI BNILDI_06575 0.45 +0.2 1,314,647 + phnI BNILDI_06575 0.45 -1.3 1,314,647 + phnI BNILDI_06575 0.45 +2.1 1,314,648 - phnI BNILDI_06575 0.45 -0.9 1,314,724 + phnI BNILDI_06575 0.52 -0.7 1,314,864 + phnI BNILDI_06575 0.65 +0.7 1,314,864 + phnI BNILDI_06575 0.65 +0.4 1,314,865 - phnI BNILDI_06575 0.65 +0.3 1,314,870 + phnI BNILDI_06575 0.66 -0.1 1,314,870 + phnI BNILDI_06575 0.66 -1.4 1,314,871 - phnI BNILDI_06575 0.66 -1.8 1,314,908 - phnI BNILDI_06575 0.69 +1.6 1,314,923 - phnI BNILDI_06575 0.71 -0.0 1,314,923 - phnI BNILDI_06575 0.71 -2.2 1,315,230 + +1.3 1,315,231 - -1.4 1,315,231 - +0.2 1,315,444 + phnH BNILDI_06580 0.36 -0.7 1,315,578 + phnH BNILDI_06580 0.59 +2.3 1,315,797 + +1.5 1,315,798 - +2.1 1,315,798 - +1.1 1,315,935 + phnG BNILDI_06585 0.26 -0.2 1,316,027 - phnG BNILDI_06585 0.47 -0.4 1,316,384 + phnF BNILDI_06590 0.16 -0.4 1,316,548 + phnF BNILDI_06590 0.39 -1.3 1,316,560 - phnF BNILDI_06590 0.40 +1.0 1,316,560 - phnF BNILDI_06590 0.40 -0.1 1,316,800 - phnF BNILDI_06590 0.73 +2.0
Or see this region's nucleotide sequence