Strain Fitness in Escherichia coli ECRC62 around BNILDI_06155

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjbB and pepE are separated by 90 nucleotidespepE and rluF are separated by 211 nucleotidesrluF and yjbD are separated by 0 nucleotidesyjbD and BNILDI_06165 are separated by 529 nucleotides BNILDI_06145: yjbB - Uncharacterized protein YjbB, at 1,226,429 to 1,228,060 yjbB BNILDI_06150: pepE - dipeptidase PepE, at 1,228,151 to 1,228,840 pepE BNILDI_06155: rluF - 23S rRNA pseudouridine(2604) synthase RluF, at 1,229,052 to 1,229,924 rluF BNILDI_06160: yjbD - Uncharacterized protein YjbD, at 1,229,925 to 1,230,197 yjbD BNILDI_06165: BNILDI_06165 - SPFH domain / Band 7 family, at 1,230,727 to 1,231,854 _06165 Position (kb) 1229 1230Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1228.058 kb on + strandat 1228.059 kb on - strandat 1228.059 kb on - strandat 1228.059 kb on - strandat 1228.061 kb on + strandat 1228.061 kb on + strandat 1228.061 kb on + strandat 1228.062 kb on - strandat 1228.076 kb on - strandat 1228.084 kb on + strandat 1228.198 kb on + strandat 1228.206 kb on + strandat 1228.206 kb on + strandat 1228.207 kb on - strandat 1228.207 kb on - strandat 1228.262 kb on - strand, within pepEat 1228.318 kb on + strand, within pepEat 1228.436 kb on - strand, within pepEat 1228.494 kb on + strand, within pepEat 1228.494 kb on + strand, within pepEat 1228.495 kb on - strand, within pepEat 1228.495 kb on - strand, within pepEat 1228.574 kb on - strand, within pepEat 1228.820 kb on - strandat 1228.826 kb on + strandat 1228.827 kb on - strandat 1228.827 kb on - strandat 1228.841 kb on + strandat 1228.856 kb on + strandat 1228.857 kb on - strandat 1228.878 kb on + strandat 1228.878 kb on + strandat 1228.879 kb on - strandat 1228.900 kb on + strandat 1228.984 kb on + strandat 1228.984 kb on + strandat 1228.984 kb on + strandat 1228.985 kb on - strandat 1229.020 kb on + strandat 1229.021 kb on - strandat 1229.025 kb on + strandat 1229.025 kb on + strandat 1229.025 kb on + strandat 1229.026 kb on - strandat 1229.028 kb on - strandat 1229.028 kb on - strandat 1229.081 kb on + strandat 1229.131 kb on - strandat 1229.424 kb on - strand, within rluFat 1229.461 kb on - strand, within rluFat 1229.498 kb on + strand, within rluFat 1229.507 kb on + strand, within rluFat 1229.543 kb on + strand, within rluFat 1229.543 kb on + strand, within rluFat 1229.589 kb on - strand, within rluFat 1229.666 kb on + strand, within rluFat 1229.675 kb on + strand, within rluFat 1229.751 kb on - strand, within rluFat 1229.787 kb on - strand, within rluFat 1229.892 kb on - strandat 1229.949 kb on - strandat 1229.963 kb on + strand, within yjbDat 1229.988 kb on - strand, within yjbDat 1229.988 kb on - strand, within yjbDat 1229.989 kb on + strand, within yjbDat 1229.989 kb on + strand, within yjbDat 1230.054 kb on - strand, within yjbDat 1230.061 kb on + strand, within yjbDat 1230.062 kb on - strand, within yjbDat 1230.062 kb on - strand, within yjbDat 1230.062 kb on - strand, within yjbDat 1230.072 kb on - strand, within yjbDat 1230.072 kb on - strand, within yjbDat 1230.231 kb on + strandat 1230.264 kb on - strandat 1230.316 kb on + strandat 1230.317 kb on - strandat 1230.437 kb on - strandat 1230.582 kb on + strandat 1230.595 kb on - strandat 1230.746 kb on + strandat 1230.747 kb on - strandat 1230.788 kb on - strandat 1230.801 kb on - strandat 1230.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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1,228,058 + -0.7
1,228,059 - +1.4
1,228,059 - -0.6
1,228,059 - +0.0
1,228,061 + +0.7
1,228,061 + -0.0
1,228,061 + +0.2
1,228,062 - -0.3
1,228,076 - +0.5
1,228,084 + +0.7
1,228,198 + -1.2
1,228,206 + +0.1
1,228,206 + -0.8
1,228,207 - -0.3
1,228,207 - -1.3
1,228,262 - pepE BNILDI_06150 0.16 +0.3
1,228,318 + pepE BNILDI_06150 0.24 -0.9
1,228,436 - pepE BNILDI_06150 0.41 +0.4
1,228,494 + pepE BNILDI_06150 0.50 -0.4
1,228,494 + pepE BNILDI_06150 0.50 +2.3
1,228,495 - pepE BNILDI_06150 0.50 -0.3
1,228,495 - pepE BNILDI_06150 0.50 +0.6
1,228,574 - pepE BNILDI_06150 0.61 -0.4
1,228,820 - +0.4
1,228,826 + -0.5
1,228,827 - -1.0
1,228,827 - +1.5
1,228,841 + -1.1
1,228,856 + +0.2
1,228,857 - -0.1
1,228,878 + -0.5
1,228,878 + -0.4
1,228,879 - -0.9
1,228,900 + +0.4
1,228,984 + +0.7
1,228,984 + -1.5
1,228,984 + -1.8
1,228,985 - -0.2
1,229,020 + -0.4
1,229,021 - +0.2
1,229,025 + -1.2
1,229,025 + +0.1
1,229,025 + -1.2
1,229,026 - +0.4
1,229,028 - +2.3
1,229,028 - -1.6
1,229,081 + +2.3
1,229,131 - -0.9
1,229,424 - rluF BNILDI_06155 0.43 -1.0
1,229,461 - rluF BNILDI_06155 0.47 +0.7
1,229,498 + rluF BNILDI_06155 0.51 -1.7
1,229,507 + rluF BNILDI_06155 0.52 -1.2
1,229,543 + rluF BNILDI_06155 0.56 +0.4
1,229,543 + rluF BNILDI_06155 0.56 +4.6
1,229,589 - rluF BNILDI_06155 0.62 -0.5
1,229,666 + rluF BNILDI_06155 0.70 +0.8
1,229,675 + rluF BNILDI_06155 0.71 -3.1
1,229,751 - rluF BNILDI_06155 0.80 +0.3
1,229,787 - rluF BNILDI_06155 0.84 -0.9
1,229,892 - +0.5
1,229,949 - -0.9
1,229,963 + yjbD BNILDI_06160 0.14 -1.4
1,229,988 - yjbD BNILDI_06160 0.23 -1.4
1,229,988 - yjbD BNILDI_06160 0.23 -1.4
1,229,989 + yjbD BNILDI_06160 0.23 -2.3
1,229,989 + yjbD BNILDI_06160 0.23 -1.3
1,230,054 - yjbD BNILDI_06160 0.47 -0.5
1,230,061 + yjbD BNILDI_06160 0.50 +0.6
1,230,062 - yjbD BNILDI_06160 0.50 -1.4
1,230,062 - yjbD BNILDI_06160 0.50 +0.1
1,230,062 - yjbD BNILDI_06160 0.50 +1.6
1,230,072 - yjbD BNILDI_06160 0.54 -0.4
1,230,072 - yjbD BNILDI_06160 0.54 -1.2
1,230,231 + +1.4
1,230,264 - +1.8
1,230,316 + -0.0
1,230,317 - -2.0
1,230,437 - +0.7
1,230,582 + -2.9
1,230,595 - -2.4
1,230,746 + -0.4
1,230,747 - -2.3
1,230,788 - -0.8
1,230,801 - -3.2
1,230,831 - -0.5

Or see this region's nucleotide sequence