Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hslU and hslV are separated by 9 nucleotides hslV and ftsN are separated by 92 nucleotides ftsN and cytR are separated by 196 nucleotides
BNILDI_05645: hslU - HslU--HslV peptidase ATPase subunit, at 1,113,264 to 1,114,595
hslU
BNILDI_05650: hslV - ATP-dependent protease subunit HslV, at 1,114,605 to 1,115,135
hslV
BNILDI_05655: ftsN - cell division protein FtsN, at 1,115,228 to 1,116,082
ftsN
BNILDI_05660: cytR - DNA-binding transcriptional regulator CytR, at 1,116,279 to 1,117,304
cytR
Position (kb)
1115
1116
1117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1114.299 kb on - strand, within hslU at 1114.302 kb on - strand, within hslU at 1114.410 kb on - strand, within hslU at 1114.607 kb on - strand at 1114.615 kb on + strand at 1114.621 kb on - strand at 1114.621 kb on - strand at 1114.651 kb on + strand at 1114.652 kb on - strand at 1114.652 kb on - strand at 1114.716 kb on - strand, within hslV at 1114.971 kb on - strand, within hslV at 1115.121 kb on + strand at 1115.121 kb on + strand at 1115.121 kb on + strand at 1115.121 kb on + strand at 1115.121 kb on + strand at 1115.122 kb on - strand at 1115.127 kb on - strand at 1115.127 kb on - strand at 1115.165 kb on + strand at 1115.166 kb on - strand at 1115.203 kb on - strand at 1115.204 kb on + strand at 1115.204 kb on + strand at 1115.205 kb on - strand at 1115.205 kb on - strand at 1115.260 kb on + strand at 1115.261 kb on - strand at 1115.396 kb on + strand, within ftsN at 1115.582 kb on - strand, within ftsN at 1115.594 kb on - strand, within ftsN at 1115.636 kb on - strand, within ftsN at 1115.636 kb on - strand, within ftsN at 1115.636 kb on - strand, within ftsN at 1116.229 kb on + strand at 1116.229 kb on + strand at 1116.229 kb on + strand at 1116.276 kb on - strand at 1116.280 kb on + strand at 1116.375 kb on + strand at 1116.383 kb on + strand, within cytR at 1116.384 kb on - strand, within cytR at 1116.384 kb on - strand, within cytR at 1116.643 kb on + strand, within cytR at 1116.688 kb on + strand, within cytR at 1116.689 kb on - strand, within cytR at 1116.767 kb on - strand, within cytR at 1116.767 kb on - strand, within cytR at 1116.768 kb on + strand, within cytR at 1116.768 kb on + strand, within cytR at 1116.768 kb on + strand, within cytR at 1116.769 kb on - strand, within cytR at 1116.769 kb on - strand, within cytR at 1116.772 kb on + strand, within cytR at 1116.772 kb on + strand, within cytR at 1116.773 kb on - strand, within cytR at 1116.778 kb on - strand, within cytR at 1116.818 kb on + strand, within cytR at 1116.818 kb on + strand, within cytR at 1116.819 kb on - strand, within cytR at 1116.819 kb on - strand, within cytR at 1116.822 kb on + strand, within cytR at 1116.823 kb on - strand, within cytR at 1116.823 kb on - strand, within cytR at 1116.873 kb on - strand, within cytR
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 1,114,299 - hslU BNILDI_05645 0.78 -0.7 1,114,302 - hslU BNILDI_05645 0.78 +1.0 1,114,410 - hslU BNILDI_05645 0.86 -1.2 1,114,607 - -0.3 1,114,615 + +0.5 1,114,621 - +0.6 1,114,621 - +0.9 1,114,651 + +1.5 1,114,652 - +0.9 1,114,652 - -0.7 1,114,716 - hslV BNILDI_05650 0.21 +1.0 1,114,971 - hslV BNILDI_05650 0.69 +2.3 1,115,121 + -0.3 1,115,121 + +0.2 1,115,121 + -0.1 1,115,121 + -0.3 1,115,121 + +0.2 1,115,122 - +0.3 1,115,127 - +1.7 1,115,127 - -0.2 1,115,165 + +0.2 1,115,166 - +0.9 1,115,203 - -0.4 1,115,204 + +2.7 1,115,204 + +0.3 1,115,205 - -0.8 1,115,205 - +0.2 1,115,260 + -0.6 1,115,261 - -0.7 1,115,396 + ftsN BNILDI_05655 0.20 -1.5 1,115,582 - ftsN BNILDI_05655 0.41 +0.4 1,115,594 - ftsN BNILDI_05655 0.43 -0.3 1,115,636 - ftsN BNILDI_05655 0.48 -1.8 1,115,636 - ftsN BNILDI_05655 0.48 +0.3 1,115,636 - ftsN BNILDI_05655 0.48 -0.7 1,116,229 + -1.6 1,116,229 + -3.6 1,116,229 + +0.7 1,116,276 - -1.3 1,116,280 + -0.6 1,116,375 + -0.0 1,116,383 + cytR BNILDI_05660 0.10 +2.0 1,116,384 - cytR BNILDI_05660 0.10 +1.1 1,116,384 - cytR BNILDI_05660 0.10 -1.0 1,116,643 + cytR BNILDI_05660 0.35 -1.8 1,116,688 + cytR BNILDI_05660 0.40 -1.8 1,116,689 - cytR BNILDI_05660 0.40 +0.7 1,116,767 - cytR BNILDI_05660 0.48 +0.5 1,116,767 - cytR BNILDI_05660 0.48 -0.8 1,116,768 + cytR BNILDI_05660 0.48 -0.8 1,116,768 + cytR BNILDI_05660 0.48 -0.3 1,116,768 + cytR BNILDI_05660 0.48 -0.3 1,116,769 - cytR BNILDI_05660 0.48 +0.2 1,116,769 - cytR BNILDI_05660 0.48 -0.2 1,116,772 + cytR BNILDI_05660 0.48 +0.3 1,116,772 + cytR BNILDI_05660 0.48 -0.0 1,116,773 - cytR BNILDI_05660 0.48 +0.2 1,116,778 - cytR BNILDI_05660 0.49 +0.7 1,116,818 + cytR BNILDI_05660 0.53 +0.6 1,116,818 + cytR BNILDI_05660 0.53 -1.7 1,116,819 - cytR BNILDI_05660 0.53 -0.0 1,116,819 - cytR BNILDI_05660 0.53 -0.0 1,116,822 + cytR BNILDI_05660 0.53 +0.3 1,116,823 - cytR BNILDI_05660 0.53 -0.6 1,116,823 - cytR BNILDI_05660 0.53 -1.1 1,116,873 - cytR BNILDI_05660 0.58 -1.1
Or see this region's nucleotide sequence