Strain Fitness in Escherichia coli ECRC62 around BNILDI_05655

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthslU and hslV are separated by 9 nucleotideshslV and ftsN are separated by 92 nucleotidesftsN and cytR are separated by 196 nucleotides BNILDI_05645: hslU - HslU--HslV peptidase ATPase subunit, at 1,113,264 to 1,114,595 hslU BNILDI_05650: hslV - ATP-dependent protease subunit HslV, at 1,114,605 to 1,115,135 hslV BNILDI_05655: ftsN - cell division protein FtsN, at 1,115,228 to 1,116,082 ftsN BNILDI_05660: cytR - DNA-binding transcriptional regulator CytR, at 1,116,279 to 1,117,304 cytR Position (kb) 1115 1116 1117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1114.299 kb on - strand, within hslUat 1114.302 kb on - strand, within hslUat 1114.410 kb on - strand, within hslUat 1114.607 kb on - strandat 1114.615 kb on + strandat 1114.621 kb on - strandat 1114.621 kb on - strandat 1114.651 kb on + strandat 1114.652 kb on - strandat 1114.652 kb on - strandat 1114.716 kb on - strand, within hslVat 1114.971 kb on - strand, within hslVat 1115.121 kb on + strandat 1115.121 kb on + strandat 1115.121 kb on + strandat 1115.121 kb on + strandat 1115.121 kb on + strandat 1115.122 kb on - strandat 1115.127 kb on - strandat 1115.127 kb on - strandat 1115.165 kb on + strandat 1115.166 kb on - strandat 1115.203 kb on - strandat 1115.204 kb on + strandat 1115.204 kb on + strandat 1115.205 kb on - strandat 1115.205 kb on - strandat 1115.260 kb on + strandat 1115.261 kb on - strandat 1115.396 kb on + strand, within ftsNat 1115.582 kb on - strand, within ftsNat 1115.594 kb on - strand, within ftsNat 1115.636 kb on - strand, within ftsNat 1115.636 kb on - strand, within ftsNat 1115.636 kb on - strand, within ftsNat 1116.229 kb on + strandat 1116.229 kb on + strandat 1116.229 kb on + strandat 1116.276 kb on - strandat 1116.280 kb on + strandat 1116.375 kb on + strandat 1116.383 kb on + strand, within cytRat 1116.384 kb on - strand, within cytRat 1116.384 kb on - strand, within cytRat 1116.643 kb on + strand, within cytRat 1116.688 kb on + strand, within cytRat 1116.689 kb on - strand, within cytRat 1116.767 kb on - strand, within cytRat 1116.767 kb on - strand, within cytRat 1116.768 kb on + strand, within cytRat 1116.768 kb on + strand, within cytRat 1116.768 kb on + strand, within cytRat 1116.769 kb on - strand, within cytRat 1116.769 kb on - strand, within cytRat 1116.772 kb on + strand, within cytRat 1116.772 kb on + strand, within cytRat 1116.773 kb on - strand, within cytRat 1116.778 kb on - strand, within cytRat 1116.818 kb on + strand, within cytRat 1116.818 kb on + strand, within cytRat 1116.819 kb on - strand, within cytRat 1116.819 kb on - strand, within cytRat 1116.822 kb on + strand, within cytRat 1116.823 kb on - strand, within cytRat 1116.823 kb on - strand, within cytRat 1116.873 kb on - strand, within cytR

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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1,114,299 - hslU BNILDI_05645 0.78 -0.7
1,114,302 - hslU BNILDI_05645 0.78 +1.0
1,114,410 - hslU BNILDI_05645 0.86 -1.2
1,114,607 - -0.3
1,114,615 + +0.5
1,114,621 - +0.6
1,114,621 - +0.9
1,114,651 + +1.5
1,114,652 - +0.9
1,114,652 - -0.7
1,114,716 - hslV BNILDI_05650 0.21 +1.0
1,114,971 - hslV BNILDI_05650 0.69 +2.3
1,115,121 + -0.3
1,115,121 + +0.2
1,115,121 + -0.1
1,115,121 + -0.3
1,115,121 + +0.2
1,115,122 - +0.3
1,115,127 - +1.7
1,115,127 - -0.2
1,115,165 + +0.2
1,115,166 - +0.9
1,115,203 - -0.4
1,115,204 + +2.7
1,115,204 + +0.3
1,115,205 - -0.8
1,115,205 - +0.2
1,115,260 + -0.6
1,115,261 - -0.7
1,115,396 + ftsN BNILDI_05655 0.20 -1.5
1,115,582 - ftsN BNILDI_05655 0.41 +0.4
1,115,594 - ftsN BNILDI_05655 0.43 -0.3
1,115,636 - ftsN BNILDI_05655 0.48 -1.8
1,115,636 - ftsN BNILDI_05655 0.48 +0.3
1,115,636 - ftsN BNILDI_05655 0.48 -0.7
1,116,229 + -1.6
1,116,229 + -3.6
1,116,229 + +0.7
1,116,276 - -1.3
1,116,280 + -0.6
1,116,375 + -0.0
1,116,383 + cytR BNILDI_05660 0.10 +2.0
1,116,384 - cytR BNILDI_05660 0.10 +1.1
1,116,384 - cytR BNILDI_05660 0.10 -1.0
1,116,643 + cytR BNILDI_05660 0.35 -1.8
1,116,688 + cytR BNILDI_05660 0.40 -1.8
1,116,689 - cytR BNILDI_05660 0.40 +0.7
1,116,767 - cytR BNILDI_05660 0.48 +0.5
1,116,767 - cytR BNILDI_05660 0.48 -0.8
1,116,768 + cytR BNILDI_05660 0.48 -0.8
1,116,768 + cytR BNILDI_05660 0.48 -0.3
1,116,768 + cytR BNILDI_05660 0.48 -0.3
1,116,769 - cytR BNILDI_05660 0.48 +0.2
1,116,769 - cytR BNILDI_05660 0.48 -0.2
1,116,772 + cytR BNILDI_05660 0.48 +0.3
1,116,772 + cytR BNILDI_05660 0.48 -0.0
1,116,773 - cytR BNILDI_05660 0.48 +0.2
1,116,778 - cytR BNILDI_05660 0.49 +0.7
1,116,818 + cytR BNILDI_05660 0.53 +0.6
1,116,818 + cytR BNILDI_05660 0.53 -1.7
1,116,819 - cytR BNILDI_05660 0.53 -0.0
1,116,819 - cytR BNILDI_05660 0.53 -0.0
1,116,822 + cytR BNILDI_05660 0.53 +0.3
1,116,823 - cytR BNILDI_05660 0.53 -0.6
1,116,823 - cytR BNILDI_05660 0.53 -1.1
1,116,873 - cytR BNILDI_05660 0.58 -1.1

Or see this region's nucleotide sequence