Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rep and gppA are separated by 46 nucleotides gppA and rhlB are separated by 133 nucleotides
BNILDI_04780: rep - DNA helicase Rep, at 947,604 to 949,625
rep
BNILDI_04785: gppA - guanosine-5'-triphosphate,3'-diphosphate diphosphatase, at 949,672 to 951,156
gppA
BNILDI_04790: rhlB - ATP-dependent RNA helicase RhlB, at 951,290 to 952,555
rhlB
Position (kb) 949
950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 949.069 kb on - strand, within rep at 949.205 kb on + strand, within rep at 949.308 kb on + strand, within rep at 949.623 kb on + strand at 949.623 kb on + strand at 949.666 kb on + strand at 949.674 kb on - strand at 949.700 kb on + strand at 949.700 kb on + strand at 949.700 kb on + strand at 949.700 kb on + strand at 949.700 kb on + strand at 949.701 kb on - strand at 949.701 kb on - strand at 949.701 kb on - strand at 949.701 kb on - strand at 949.701 kb on - strand at 949.728 kb on + strand at 949.804 kb on + strand at 949.942 kb on - strand, within gppA at 950.197 kb on - strand, within gppA at 950.197 kb on - strand, within gppA at 950.215 kb on - strand, within gppA at 950.307 kb on + strand, within gppA at 950.307 kb on + strand, within gppA at 950.307 kb on + strand, within gppA at 950.307 kb on + strand, within gppA at 950.308 kb on - strand, within gppA at 950.308 kb on - strand, within gppA at 950.558 kb on - strand, within gppA at 950.578 kb on + strand, within gppA at 950.578 kb on + strand, within gppA at 950.578 kb on + strand, within gppA at 950.578 kb on + strand, within gppA at 950.631 kb on + strand, within gppA at 950.740 kb on + strand, within gppA at 950.740 kb on + strand, within gppA at 950.741 kb on - strand, within gppA at 950.741 kb on - strand, within gppA at 950.741 kb on - strand, within gppA at 950.897 kb on - strand, within gppA at 950.938 kb on - strand, within gppA at 951.099 kb on + strand at 951.099 kb on + strand at 951.100 kb on - strand at 951.109 kb on - strand at 951.134 kb on + strand at 951.134 kb on + strand at 951.135 kb on - strand at 951.135 kb on - strand at 951.156 kb on + strand at 951.214 kb on - strand at 951.214 kb on - strand at 951.216 kb on + strand at 951.216 kb on + strand at 951.216 kb on + strand at 951.216 kb on + strand at 951.217 kb on - strand at 951.217 kb on - strand at 951.217 kb on - strand at 951.217 kb on - strand at 951.217 kb on - strand at 951.217 kb on - strand at 951.221 kb on + strand at 951.221 kb on + strand at 951.221 kb on + strand at 951.222 kb on - strand at 951.222 kb on - strand at 951.222 kb on - strand at 951.222 kb on - strand at 951.222 kb on - strand at 951.222 kb on - strand at 951.256 kb on + strand at 951.256 kb on + strand at 951.288 kb on - strand at 951.311 kb on - strand at 951.347 kb on - strand at 951.347 kb on - strand at 951.405 kb on + strand at 951.406 kb on - strand at 951.406 kb on - strand at 951.434 kb on - strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.435 kb on + strand, within rhlB at 951.436 kb on - strand, within rhlB at 951.436 kb on - strand, within rhlB at 951.436 kb on - strand, within rhlB at 951.436 kb on - strand, within rhlB at 951.436 kb on - strand, within rhlB at 951.436 kb on - strand, within rhlB at 951.436 kb on - strand, within rhlB at 951.446 kb on - strand, within rhlB at 951.465 kb on + strand, within rhlB at 951.466 kb on - strand, within rhlB at 951.466 kb on - strand, within rhlB at 951.466 kb on - strand, within rhlB at 951.487 kb on + strand, within rhlB at 951.537 kb on + strand, within rhlB at 951.538 kb on - strand, within rhlB at 951.538 kb on - strand, within rhlB at 951.538 kb on - strand, within rhlB at 951.564 kb on + strand, within rhlB at 951.564 kb on + strand, within rhlB at 951.568 kb on + strand, within rhlB at 951.569 kb on - strand, within rhlB at 951.592 kb on + strand, within rhlB at 951.763 kb on + strand, within rhlB at 951.764 kb on - strand, within rhlB at 951.838 kb on + strand, within rhlB at 951.862 kb on + strand, within rhlB at 951.862 kb on + strand, within rhlB at 951.866 kb on - strand, within rhlB at 951.901 kb on + strand, within rhlB at 951.901 kb on + strand, within rhlB at 952.022 kb on - strand, within rhlB at 952.022 kb on - strand, within rhlB at 952.027 kb on + strand, within rhlB at 952.030 kb on + strand, within rhlB at 952.030 kb on + strand, within rhlB at 952.030 kb on + strand, within rhlB at 952.044 kb on + strand, within rhlB at 952.045 kb on - strand, within rhlB at 952.045 kb on - strand, within rhlB at 952.067 kb on + strand, within rhlB at 952.067 kb on + strand, within rhlB at 952.068 kb on - strand, within rhlB
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 949,069 - rep BNILDI_04780 0.72 +0.7 949,205 + rep BNILDI_04780 0.79 +0.3 949,308 + rep BNILDI_04780 0.84 -1.7 949,623 + -0.3 949,623 + -0.9 949,666 + +0.1 949,674 - -1.1 949,700 + +1.7 949,700 + -0.3 949,700 + -0.1 949,700 + +1.3 949,700 + +1.0 949,701 - -1.0 949,701 - +1.7 949,701 - -0.4 949,701 - -0.3 949,701 - +2.2 949,728 + +0.4 949,804 + +1.5 949,942 - gppA BNILDI_04785 0.18 +0.7 950,197 - gppA BNILDI_04785 0.35 +0.1 950,197 - gppA BNILDI_04785 0.35 +1.4 950,215 - gppA BNILDI_04785 0.37 +1.5 950,307 + gppA BNILDI_04785 0.43 +0.4 950,307 + gppA BNILDI_04785 0.43 +0.5 950,307 + gppA BNILDI_04785 0.43 +0.3 950,307 + gppA BNILDI_04785 0.43 +0.9 950,308 - gppA BNILDI_04785 0.43 +0.5 950,308 - gppA BNILDI_04785 0.43 -0.7 950,558 - gppA BNILDI_04785 0.60 +1.7 950,578 + gppA BNILDI_04785 0.61 +0.7 950,578 + gppA BNILDI_04785 0.61 +2.3 950,578 + gppA BNILDI_04785 0.61 +0.3 950,578 + gppA BNILDI_04785 0.61 +1.0 950,631 + gppA BNILDI_04785 0.65 +0.6 950,740 + gppA BNILDI_04785 0.72 +0.8 950,740 + gppA BNILDI_04785 0.72 -1.1 950,741 - gppA BNILDI_04785 0.72 +1.3 950,741 - gppA BNILDI_04785 0.72 +0.8 950,741 - gppA BNILDI_04785 0.72 +0.3 950,897 - gppA BNILDI_04785 0.82 +0.8 950,938 - gppA BNILDI_04785 0.85 -0.0 951,099 + +0.3 951,099 + -0.0 951,100 - +0.4 951,109 - -0.5 951,134 + -1.0 951,134 + +0.9 951,135 - -0.0 951,135 - -0.5 951,156 + -0.1 951,214 - -1.3 951,214 - -1.3 951,216 + -0.1 951,216 + +0.6 951,216 + +0.7 951,216 + +1.3 951,217 - +0.4 951,217 - -0.8 951,217 - +1.8 951,217 - -0.5 951,217 - -1.7 951,217 - -0.5 951,221 + -0.7 951,221 + +0.5 951,221 + +0.3 951,222 - -1.0 951,222 - -1.6 951,222 - -0.8 951,222 - +1.8 951,222 - -0.3 951,222 - +0.3 951,256 + -0.5 951,256 + -0.4 951,288 - -0.3 951,311 - +0.8 951,347 - -1.4 951,347 - +0.1 951,405 + +1.2 951,406 - -0.1 951,406 - +1.1 951,434 - rhlB BNILDI_04790 0.11 +1.9 951,435 + rhlB BNILDI_04790 0.11 +0.7 951,435 + rhlB BNILDI_04790 0.11 +0.7 951,435 + rhlB BNILDI_04790 0.11 +1.1 951,435 + rhlB BNILDI_04790 0.11 +0.1 951,435 + rhlB BNILDI_04790 0.11 -1.0 951,435 + rhlB BNILDI_04790 0.11 +1.1 951,435 + rhlB BNILDI_04790 0.11 +2.3 951,435 + rhlB BNILDI_04790 0.11 +0.6 951,435 + rhlB BNILDI_04790 0.11 +0.7 951,435 + rhlB BNILDI_04790 0.11 +0.3 951,436 - rhlB BNILDI_04790 0.12 -0.7 951,436 - rhlB BNILDI_04790 0.12 +1.2 951,436 - rhlB BNILDI_04790 0.12 -0.7 951,436 - rhlB BNILDI_04790 0.12 -0.5 951,436 - rhlB BNILDI_04790 0.12 +1.1 951,436 - rhlB BNILDI_04790 0.12 +0.1 951,436 - rhlB BNILDI_04790 0.12 +0.3 951,446 - rhlB BNILDI_04790 0.12 +0.2 951,465 + rhlB BNILDI_04790 0.14 -0.0 951,466 - rhlB BNILDI_04790 0.14 -0.7 951,466 - rhlB BNILDI_04790 0.14 +0.7 951,466 - rhlB BNILDI_04790 0.14 +2.3 951,487 + rhlB BNILDI_04790 0.16 -0.3 951,537 + rhlB BNILDI_04790 0.20 -0.5 951,538 - rhlB BNILDI_04790 0.20 -2.6 951,538 - rhlB BNILDI_04790 0.20 +2.4 951,538 - rhlB BNILDI_04790 0.20 +0.5 951,564 + rhlB BNILDI_04790 0.22 -0.5 951,564 + rhlB BNILDI_04790 0.22 -1.0 951,568 + rhlB BNILDI_04790 0.22 +2.5 951,569 - rhlB BNILDI_04790 0.22 +0.2 951,592 + rhlB BNILDI_04790 0.24 +1.3 951,763 + rhlB BNILDI_04790 0.37 -0.8 951,764 - rhlB BNILDI_04790 0.37 +1.0 951,838 + rhlB BNILDI_04790 0.43 +0.7 951,862 + rhlB BNILDI_04790 0.45 -0.7 951,862 + rhlB BNILDI_04790 0.45 +0.7 951,866 - rhlB BNILDI_04790 0.45 +2.8 951,901 + rhlB BNILDI_04790 0.48 +1.5 951,901 + rhlB BNILDI_04790 0.48 +0.5 952,022 - rhlB BNILDI_04790 0.58 +1.1 952,022 - rhlB BNILDI_04790 0.58 +1.7 952,027 + rhlB BNILDI_04790 0.58 +0.8 952,030 + rhlB BNILDI_04790 0.58 +0.7 952,030 + rhlB BNILDI_04790 0.58 -0.8 952,030 + rhlB BNILDI_04790 0.58 -0.3 952,044 + rhlB BNILDI_04790 0.60 +0.4 952,045 - rhlB BNILDI_04790 0.60 -1.1 952,045 - rhlB BNILDI_04790 0.60 +0.3 952,067 + rhlB BNILDI_04790 0.61 +0.2 952,067 + rhlB BNILDI_04790 0.61 +0.7 952,068 - rhlB BNILDI_04790 0.61 +0.5
Or see this region's nucleotide sequence