Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dctA and hmsP are separated by 182 nucleotides hmsP and bcsC are separated by 120 nucleotides
BNILDI_03395: dctA - C4-dicarboxylate transporter DctC, at 661,867 to 663,153
dctA
BNILDI_03400: hmsP - biofilm formation regulator HmsP, at 663,336 to 665,285
hmsP
BNILDI_03405: bcsC - cellulose synthase complex outer membrane protein BcsC, at 665,406 to 668,879
bcsC
Position (kb) 663
664
665
666 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 662.365 kb on + strand, within dctA at 662.391 kb on - strand, within dctA at 662.410 kb on - strand, within dctA at 662.464 kb on - strand, within dctA at 662.469 kb on + strand, within dctA at 662.470 kb on - strand, within dctA at 662.474 kb on + strand, within dctA at 662.475 kb on - strand, within dctA at 662.475 kb on - strand, within dctA at 662.484 kb on + strand, within dctA at 662.484 kb on + strand, within dctA at 662.680 kb on + strand, within dctA at 662.795 kb on + strand, within dctA at 662.875 kb on - strand, within dctA at 662.875 kb on - strand, within dctA at 662.916 kb on - strand, within dctA at 662.916 kb on - strand, within dctA at 662.916 kb on - strand, within dctA at 662.981 kb on - strand, within dctA at 662.989 kb on - strand, within dctA at 663.018 kb on + strand, within dctA at 663.018 kb on + strand, within dctA at 663.064 kb on + strand at 663.135 kb on + strand at 663.135 kb on + strand at 663.136 kb on - strand at 663.337 kb on + strand at 663.338 kb on - strand at 663.338 kb on - strand at 663.352 kb on + strand at 663.353 kb on - strand at 663.478 kb on - strand at 663.478 kb on - strand at 663.503 kb on + strand at 663.503 kb on + strand at 663.503 kb on + strand at 663.504 kb on - strand at 663.524 kb on + strand at 663.524 kb on + strand at 663.525 kb on - strand at 663.525 kb on - strand at 663.525 kb on - strand at 663.704 kb on + strand, within hmsP at 663.839 kb on + strand, within hmsP at 663.939 kb on + strand, within hmsP at 664.157 kb on + strand, within hmsP at 664.245 kb on - strand, within hmsP at 664.394 kb on + strand, within hmsP at 664.394 kb on + strand, within hmsP at 664.395 kb on - strand, within hmsP at 664.654 kb on + strand, within hmsP at 664.654 kb on + strand, within hmsP at 664.655 kb on - strand, within hmsP at 664.655 kb on - strand, within hmsP at 664.655 kb on - strand, within hmsP at 664.746 kb on - strand, within hmsP at 664.877 kb on + strand, within hmsP at 664.877 kb on + strand, within hmsP at 664.877 kb on + strand, within hmsP at 664.877 kb on + strand, within hmsP at 664.877 kb on + strand, within hmsP at 664.877 kb on + strand, within hmsP at 664.878 kb on - strand, within hmsP at 664.878 kb on - strand, within hmsP at 664.879 kb on + strand, within hmsP at 664.880 kb on - strand, within hmsP at 664.880 kb on - strand, within hmsP at 664.880 kb on - strand, within hmsP at 664.880 kb on - strand, within hmsP at 664.884 kb on - strand, within hmsP at 665.064 kb on + strand, within hmsP at 665.111 kb on + strand at 665.112 kb on - strand at 665.112 kb on - strand at 665.112 kb on - strand at 665.112 kb on - strand at 665.112 kb on - strand at 665.144 kb on + strand at 665.155 kb on - strand at 665.204 kb on + strand at 665.206 kb on + strand at 665.317 kb on - strand at 665.363 kb on - strand at 665.424 kb on + strand at 665.425 kb on - strand at 665.476 kb on + strand at 665.481 kb on + strand at 665.481 kb on + strand at 665.482 kb on - strand at 665.482 kb on - strand at 665.482 kb on - strand at 665.482 kb on - strand at 665.486 kb on - strand at 665.486 kb on - strand at 665.510 kb on - strand at 665.561 kb on + strand at 665.577 kb on + strand at 665.792 kb on - strand, within bcsC at 665.806 kb on + strand, within bcsC at 665.806 kb on + strand, within bcsC at 665.806 kb on + strand, within bcsC at 665.807 kb on - strand, within bcsC at 665.830 kb on + strand, within bcsC at 665.851 kb on + strand, within bcsC at 665.914 kb on + strand, within bcsC at 665.914 kb on + strand, within bcsC at 665.915 kb on - strand, within bcsC at 665.915 kb on - strand, within bcsC at 665.915 kb on - strand, within bcsC at 665.915 kb on - strand, within bcsC at 665.917 kb on + strand, within bcsC at 665.918 kb on - strand, within bcsC at 665.918 kb on - strand, within bcsC at 665.918 kb on - strand, within bcsC at 665.985 kb on - strand, within bcsC at 666.023 kb on - strand, within bcsC at 666.155 kb on - strand, within bcsC at 666.181 kb on + strand, within bcsC at 666.181 kb on + strand, within bcsC at 666.182 kb on - strand, within bcsC
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 662,365 + dctA BNILDI_03395 0.39 +0.9 662,391 - dctA BNILDI_03395 0.41 -1.1 662,410 - dctA BNILDI_03395 0.42 -0.9 662,464 - dctA BNILDI_03395 0.46 -1.2 662,469 + dctA BNILDI_03395 0.47 +0.3 662,470 - dctA BNILDI_03395 0.47 +1.2 662,474 + dctA BNILDI_03395 0.47 +0.1 662,475 - dctA BNILDI_03395 0.47 -0.6 662,475 - dctA BNILDI_03395 0.47 -0.8 662,484 + dctA BNILDI_03395 0.48 -0.3 662,484 + dctA BNILDI_03395 0.48 +0.4 662,680 + dctA BNILDI_03395 0.63 +2.0 662,795 + dctA BNILDI_03395 0.72 -2.0 662,875 - dctA BNILDI_03395 0.78 -0.3 662,875 - dctA BNILDI_03395 0.78 -0.4 662,916 - dctA BNILDI_03395 0.82 +0.4 662,916 - dctA BNILDI_03395 0.82 -2.0 662,916 - dctA BNILDI_03395 0.82 -4.0 662,981 - dctA BNILDI_03395 0.87 +0.4 662,989 - dctA BNILDI_03395 0.87 +0.4 663,018 + dctA BNILDI_03395 0.89 -1.0 663,018 + dctA BNILDI_03395 0.89 +0.9 663,064 + +1.2 663,135 + +2.2 663,135 + -2.4 663,136 - -0.1 663,337 + +0.6 663,338 - +0.3 663,338 - +0.2 663,352 + -1.5 663,353 - -0.2 663,478 - -2.0 663,478 - -0.4 663,503 + +0.3 663,503 + -2.0 663,503 + +0.2 663,504 - +0.5 663,524 + +3.4 663,524 + -1.4 663,525 - +0.2 663,525 - -1.0 663,525 - -1.0 663,704 + hmsP BNILDI_03400 0.19 +0.7 663,839 + hmsP BNILDI_03400 0.26 -0.4 663,939 + hmsP BNILDI_03400 0.31 -0.7 664,157 + hmsP BNILDI_03400 0.42 -1.0 664,245 - hmsP BNILDI_03400 0.47 +2.2 664,394 + hmsP BNILDI_03400 0.54 -3.2 664,394 + hmsP BNILDI_03400 0.54 +1.2 664,395 - hmsP BNILDI_03400 0.54 -2.0 664,654 + hmsP BNILDI_03400 0.68 -0.8 664,654 + hmsP BNILDI_03400 0.68 +0.3 664,655 - hmsP BNILDI_03400 0.68 +1.2 664,655 - hmsP BNILDI_03400 0.68 +2.2 664,655 - hmsP BNILDI_03400 0.68 -0.7 664,746 - hmsP BNILDI_03400 0.72 -1.7 664,877 + hmsP BNILDI_03400 0.79 +0.6 664,877 + hmsP BNILDI_03400 0.79 -0.1 664,877 + hmsP BNILDI_03400 0.79 -1.5 664,877 + hmsP BNILDI_03400 0.79 +0.0 664,877 + hmsP BNILDI_03400 0.79 -2.5 664,877 + hmsP BNILDI_03400 0.79 +0.3 664,878 - hmsP BNILDI_03400 0.79 -1.5 664,878 - hmsP BNILDI_03400 0.79 +0.6 664,879 + hmsP BNILDI_03400 0.79 -0.6 664,880 - hmsP BNILDI_03400 0.79 -0.4 664,880 - hmsP BNILDI_03400 0.79 +1.4 664,880 - hmsP BNILDI_03400 0.79 -0.3 664,880 - hmsP BNILDI_03400 0.79 +0.4 664,884 - hmsP BNILDI_03400 0.79 +1.2 665,064 + hmsP BNILDI_03400 0.89 -1.4 665,111 + -0.1 665,112 - +1.2 665,112 - +0.2 665,112 - -1.2 665,112 - -0.1 665,112 - +0.2 665,144 + -1.0 665,155 - +0.2 665,204 + +2.2 665,206 + -1.5 665,317 - -1.6 665,363 - -0.5 665,424 + -0.4 665,425 - -0.7 665,476 + -1.2 665,481 + +1.6 665,481 + -2.0 665,482 - +1.3 665,482 - +0.1 665,482 - -1.0 665,482 - -0.5 665,486 - -1.8 665,486 - -1.0 665,510 - -1.0 665,561 + +0.4 665,577 + +0.5 665,792 - bcsC BNILDI_03405 0.11 -0.2 665,806 + bcsC BNILDI_03405 0.12 +0.6 665,806 + bcsC BNILDI_03405 0.12 +0.0 665,806 + bcsC BNILDI_03405 0.12 -0.9 665,807 - bcsC BNILDI_03405 0.12 -1.5 665,830 + bcsC BNILDI_03405 0.12 -0.1 665,851 + bcsC BNILDI_03405 0.13 +0.6 665,914 + bcsC BNILDI_03405 0.15 -0.7 665,914 + bcsC BNILDI_03405 0.15 +0.2 665,915 - bcsC BNILDI_03405 0.15 +0.3 665,915 - bcsC BNILDI_03405 0.15 +0.3 665,915 - bcsC BNILDI_03405 0.15 -2.1 665,915 - bcsC BNILDI_03405 0.15 -1.5 665,917 + bcsC BNILDI_03405 0.15 +0.5 665,918 - bcsC BNILDI_03405 0.15 -1.4 665,918 - bcsC BNILDI_03405 0.15 -0.5 665,918 - bcsC BNILDI_03405 0.15 -1.2 665,985 - bcsC BNILDI_03405 0.17 -0.6 666,023 - bcsC BNILDI_03405 0.18 -0.6 666,155 - bcsC BNILDI_03405 0.22 -0.4 666,181 + bcsC BNILDI_03405 0.22 -0.4 666,181 + bcsC BNILDI_03405 0.22 +1.6 666,182 - bcsC BNILDI_03405 0.22 -0.3
Or see this region's nucleotide sequence