Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhdY and yhdZ are separated by 7 nucleotides yhdZ and 5S_rrna are separated by 230 nucleotides 5S_rrna and Thr_trna are separated by 39 nucleotides Thr_trna and 5S_rrna are separated by 14 nucleotides 5S_rrna and 23S_rrna are separated by 95 nucleotides
BNILDI_02105: yhdY - Inner membrane amino-acid ABC transporter permease protein YhdY, at 418,393 to 419,496
yhdY
BNILDI_02110: yhdZ - Uncharacterized amino-acid ABC transporter ATP-binding protein YhdZ, at 419,504 to 420,262
yhdZ
BNILDI_02115: 5S_rrna - 5S ribosomal RNA, at 420,493 to 420,608
_rrna
BNILDI_02120: Thr_trna - tRNA-Thr(ggt), at 420,648 to 420,723
_trna
BNILDI_02125: 5S_rrna - 5S ribosomal RNA, at 420,738 to 420,853
_rrna
BNILDI_02130: 23S_rrna - 23S ribosomal RNA, at 420,949 to 423,852
_rrna
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 418.653 kb on + strand, within yhdY at 418.653 kb on + strand, within yhdY at 418.654 kb on - strand, within yhdY at 418.654 kb on - strand, within yhdY at 418.658 kb on - strand, within yhdY at 418.692 kb on + strand, within yhdY at 418.765 kb on + strand, within yhdY at 418.767 kb on + strand, within yhdY at 418.768 kb on - strand, within yhdY at 418.817 kb on - strand, within yhdY at 418.817 kb on - strand, within yhdY at 418.875 kb on - strand, within yhdY at 418.884 kb on + strand, within yhdY at 418.884 kb on + strand, within yhdY at 418.968 kb on + strand, within yhdY at 419.022 kb on - strand, within yhdY at 419.029 kb on - strand, within yhdY at 419.029 kb on - strand, within yhdY at 419.125 kb on + strand, within yhdY at 419.125 kb on + strand, within yhdY at 419.126 kb on - strand, within yhdY at 419.126 kb on - strand, within yhdY at 419.126 kb on - strand, within yhdY at 419.126 kb on - strand, within yhdY at 419.176 kb on + strand, within yhdY at 419.255 kb on + strand, within yhdY at 419.275 kb on - strand, within yhdY at 419.298 kb on + strand, within yhdY at 419.380 kb on - strand, within yhdY at 419.417 kb on - strand at 419.567 kb on + strand at 419.675 kb on - strand, within yhdZ at 419.675 kb on - strand, within yhdZ at 419.677 kb on + strand, within yhdZ at 419.731 kb on + strand, within yhdZ at 419.731 kb on + strand, within yhdZ at 419.749 kb on + strand, within yhdZ at 419.895 kb on - strand, within yhdZ at 419.929 kb on + strand, within yhdZ at 419.993 kb on - strand, within yhdZ at 420.112 kb on - strand, within yhdZ at 420.161 kb on - strand, within yhdZ at 420.217 kb on + strand at 420.217 kb on + strand at 420.229 kb on + strand at 420.229 kb on + strand at 420.261 kb on - strand at 420.261 kb on - strand at 420.271 kb on + strand at 420.272 kb on - strand at 420.445 kb on + strand at 420.478 kb on + strand at 420.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 418,653 + yhdY BNILDI_02105 0.24 +0.7 418,653 + yhdY BNILDI_02105 0.24 -1.6 418,654 - yhdY BNILDI_02105 0.24 +0.8 418,654 - yhdY BNILDI_02105 0.24 +0.0 418,658 - yhdY BNILDI_02105 0.24 -0.8 418,692 + yhdY BNILDI_02105 0.27 -0.5 418,765 + yhdY BNILDI_02105 0.34 +0.2 418,767 + yhdY BNILDI_02105 0.34 +0.2 418,768 - yhdY BNILDI_02105 0.34 -0.1 418,817 - yhdY BNILDI_02105 0.38 -0.7 418,817 - yhdY BNILDI_02105 0.38 -0.1 418,875 - yhdY BNILDI_02105 0.44 -1.9 418,884 + yhdY BNILDI_02105 0.44 -1.1 418,884 + yhdY BNILDI_02105 0.44 +0.6 418,968 + yhdY BNILDI_02105 0.52 +1.0 419,022 - yhdY BNILDI_02105 0.57 -0.6 419,029 - yhdY BNILDI_02105 0.58 +2.3 419,029 - yhdY BNILDI_02105 0.58 +0.0 419,125 + yhdY BNILDI_02105 0.66 +0.8 419,125 + yhdY BNILDI_02105 0.66 +0.0 419,126 - yhdY BNILDI_02105 0.66 -0.8 419,126 - yhdY BNILDI_02105 0.66 -0.9 419,126 - yhdY BNILDI_02105 0.66 +0.2 419,126 - yhdY BNILDI_02105 0.66 +0.2 419,176 + yhdY BNILDI_02105 0.71 +1.3 419,255 + yhdY BNILDI_02105 0.78 +0.8 419,275 - yhdY BNILDI_02105 0.80 +0.1 419,298 + yhdY BNILDI_02105 0.82 -0.1 419,380 - yhdY BNILDI_02105 0.89 -0.5 419,417 - +1.2 419,567 + -1.6 419,675 - yhdZ BNILDI_02110 0.23 -0.2 419,675 - yhdZ BNILDI_02110 0.23 -0.2 419,677 + yhdZ BNILDI_02110 0.23 +0.6 419,731 + yhdZ BNILDI_02110 0.30 +1.8 419,731 + yhdZ BNILDI_02110 0.30 -1.2 419,749 + yhdZ BNILDI_02110 0.32 +0.3 419,895 - yhdZ BNILDI_02110 0.52 +0.0 419,929 + yhdZ BNILDI_02110 0.56 +2.3 419,993 - yhdZ BNILDI_02110 0.64 -0.3 420,112 - yhdZ BNILDI_02110 0.80 -1.1 420,161 - yhdZ BNILDI_02110 0.87 +0.0 420,217 + -0.4 420,217 + +1.3 420,229 + +0.4 420,229 + +1.2 420,261 - +1.3 420,261 - +0.8 420,271 + -1.3 420,272 - +0.0 420,445 + -0.8 420,478 + +0.6 420,479 - -0.4
Or see this region's nucleotide sequence