Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdsD and kdsC are separated by 20 nucleotides kdsC and lptC overlap by 4 nucleotides lptC and lptA overlap by 32 nucleotides lptA and lptB are separated by 6 nucleotides
BNILDI_01770: kdsD - arabinose-5-phosphate isomerase KdsD, at 345,640 to 346,626
kdsD
BNILDI_01775: kdsC - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 346,647 to 347,213
kdsC
BNILDI_01780: lptC - LPS export ABC transporter periplasmic protein LptC, at 347,210 to 347,785
lptC
BNILDI_01785: lptA - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 347,754 to 348,311
lptA
BNILDI_01790: lptB - LPS export ABC transporter ATP-binding protein, at 348,318 to 349,043
lptB
Position (kb) 347
348 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 346.266 kb on + strand, within kdsD at 346.266 kb on + strand, within kdsD at 346.266 kb on + strand, within kdsD at 346.272 kb on + strand, within kdsD at 346.353 kb on + strand, within kdsD at 346.412 kb on + strand, within kdsD at 346.451 kb on + strand, within kdsD at 346.455 kb on + strand, within kdsD at 346.484 kb on + strand, within kdsD at 346.526 kb on + strand, within kdsD at 346.526 kb on + strand, within kdsD at 346.526 kb on + strand, within kdsD at 346.577 kb on + strand at 346.589 kb on + strand at 346.593 kb on + strand at 346.593 kb on + strand at 346.680 kb on + strand at 346.703 kb on + strand at 346.705 kb on + strand, within kdsC at 346.773 kb on + strand, within kdsC at 346.773 kb on + strand, within kdsC at 346.773 kb on + strand, within kdsC at 346.932 kb on + strand, within kdsC at 346.932 kb on + strand, within kdsC at 346.932 kb on + strand, within kdsC at 347.161 kb on + strand at 347.161 kb on + strand at 347.161 kb on + strand at 347.164 kb on + strand at 347.638 kb on + strand, within lptC at 347.638 kb on + strand, within lptC at 347.663 kb on + strand, within lptC at 347.663 kb on + strand, within lptC at 347.663 kb on + strand, within lptC
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 346,266 + kdsD BNILDI_01770 0.63 -0.2 346,266 + kdsD BNILDI_01770 0.63 +1.4 346,266 + kdsD BNILDI_01770 0.63 -0.8 346,272 + kdsD BNILDI_01770 0.64 -0.9 346,353 + kdsD BNILDI_01770 0.72 -3.3 346,412 + kdsD BNILDI_01770 0.78 +0.0 346,451 + kdsD BNILDI_01770 0.82 +0.9 346,455 + kdsD BNILDI_01770 0.83 +0.4 346,484 + kdsD BNILDI_01770 0.86 +0.4 346,526 + kdsD BNILDI_01770 0.90 +2.9 346,526 + kdsD BNILDI_01770 0.90 +1.0 346,526 + kdsD BNILDI_01770 0.90 -1.1 346,577 + -2.4 346,589 + -2.3 346,593 + -3.1 346,593 + -2.0 346,680 + -3.7 346,703 + -1.5 346,705 + kdsC BNILDI_01775 0.10 -1.1 346,773 + kdsC BNILDI_01775 0.22 +2.4 346,773 + kdsC BNILDI_01775 0.22 -1.1 346,773 + kdsC BNILDI_01775 0.22 -0.8 346,932 + kdsC BNILDI_01775 0.50 -0.6 346,932 + kdsC BNILDI_01775 0.50 +0.4 346,932 + kdsC BNILDI_01775 0.50 +1.4 347,161 + +0.0 347,161 + -0.2 347,161 + -2.1 347,164 + +0.8 347,638 + lptC BNILDI_01780 0.74 +0.8 347,638 + lptC BNILDI_01780 0.74 -1.6 347,663 + lptC BNILDI_01780 0.79 -3.0 347,663 + lptC BNILDI_01780 0.79 -0.9 347,663 + lptC BNILDI_01780 0.79 -3.0
Or see this region's nucleotide sequence