Strain Fitness in Escherichia coli ECRC62 around BNILDI_01095

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnfeR and aer are separated by 153 nucleotidesaer and ygjG are separated by 306 nucleotides BNILDI_01090: nfeR - DNA-binding transcriptional regulator NfeR, at 210,410 to 211,033 nfeR BNILDI_01095: aer - aerotaxis sensor receptor Aer, at 211,187 to 212,707 aer BNILDI_01100: ygjG - putrescine aminotransferase, at 213,014 to 214,504 ygjG Position (kb) 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 210.235 kb on + strandat 210.245 kb on - strandat 210.266 kb on + strandat 210.266 kb on + strandat 210.436 kb on + strandat 210.686 kb on + strand, within nfeRat 210.711 kb on - strand, within nfeRat 210.748 kb on + strand, within nfeRat 210.773 kb on - strand, within nfeRat 210.975 kb on + strandat 211.018 kb on + strandat 211.018 kb on + strandat 211.099 kb on + strandat 211.405 kb on + strand, within aerat 211.433 kb on + strand, within aerat 211.645 kb on + strand, within aerat 211.645 kb on + strand, within aerat 211.645 kb on + strand, within aerat 211.646 kb on - strand, within aerat 211.646 kb on - strand, within aerat 211.936 kb on + strand, within aerat 211.941 kb on - strand, within aerat 211.941 kb on - strand, within aerat 212.024 kb on - strand, within aerat 212.027 kb on - strand, within aerat 212.139 kb on + strand, within aerat 212.279 kb on - strand, within aerat 212.320 kb on - strand, within aerat 212.374 kb on + strand, within aerat 212.374 kb on + strand, within aerat 212.375 kb on - strand, within aerat 212.375 kb on - strand, within aerat 212.376 kb on + strand, within aerat 212.565 kb on - strandat 212.608 kb on + strandat 212.622 kb on + strandat 212.622 kb on + strandat 212.623 kb on - strandat 212.623 kb on - strandat 212.623 kb on - strandat 212.675 kb on - strandat 212.691 kb on + strandat 212.866 kb on + strandat 213.157 kb on - strandat 213.226 kb on + strand, within ygjGat 213.277 kb on - strand, within ygjGat 213.321 kb on + strand, within ygjGat 213.342 kb on + strand, within ygjGat 213.346 kb on + strand, within ygjGat 213.445 kb on - strand, within ygjGat 213.637 kb on + strand, within ygjGat 213.638 kb on - strand, within ygjGat 213.638 kb on - strand, within ygjGat 213.643 kb on + strand, within ygjGat 213.644 kb on - strand, within ygjG

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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210,235 + +1.2
210,245 - +1.4
210,266 + +1.4
210,266 + +2.1
210,436 + -1.8
210,686 + nfeR BNILDI_01090 0.44 -0.6
210,711 - nfeR BNILDI_01090 0.48 -2.4
210,748 + nfeR BNILDI_01090 0.54 -2.1
210,773 - nfeR BNILDI_01090 0.58 -2.5
210,975 + -2.1
211,018 + +0.8
211,018 + -0.7
211,099 + -1.8
211,405 + aer BNILDI_01095 0.14 -2.1
211,433 + aer BNILDI_01095 0.16 -0.8
211,645 + aer BNILDI_01095 0.30 +0.8
211,645 + aer BNILDI_01095 0.30 -1.9
211,645 + aer BNILDI_01095 0.30 -1.4
211,646 - aer BNILDI_01095 0.30 -0.4
211,646 - aer BNILDI_01095 0.30 -0.4
211,936 + aer BNILDI_01095 0.49 -2.0
211,941 - aer BNILDI_01095 0.50 -1.4
211,941 - aer BNILDI_01095 0.50 -1.1
212,024 - aer BNILDI_01095 0.55 -1.0
212,027 - aer BNILDI_01095 0.55 +2.4
212,139 + aer BNILDI_01095 0.63 +0.6
212,279 - aer BNILDI_01095 0.72 -1.2
212,320 - aer BNILDI_01095 0.74 -1.7
212,374 + aer BNILDI_01095 0.78 -0.4
212,374 + aer BNILDI_01095 0.78 -0.6
212,375 - aer BNILDI_01095 0.78 -1.5
212,375 - aer BNILDI_01095 0.78 -2.2
212,376 + aer BNILDI_01095 0.78 -1.0
212,565 - -1.8
212,608 + +1.0
212,622 + -1.0
212,622 + +1.0
212,623 - -0.8
212,623 - +0.1
212,623 - +0.1
212,675 - +0.5
212,691 + -0.3
212,866 + +1.4
213,157 - +0.9
213,226 + ygjG BNILDI_01100 0.14 +1.0
213,277 - ygjG BNILDI_01100 0.18 -1.3
213,321 + ygjG BNILDI_01100 0.21 -1.5
213,342 + ygjG BNILDI_01100 0.22 +1.1
213,346 + ygjG BNILDI_01100 0.22 +2.1
213,445 - ygjG BNILDI_01100 0.29 +0.8
213,637 + ygjG BNILDI_01100 0.42 +1.5
213,638 - ygjG BNILDI_01100 0.42 -0.9
213,638 - ygjG BNILDI_01100 0.42 +1.6
213,643 + ygjG BNILDI_01100 0.42 +0.7
213,644 - ygjG BNILDI_01100 0.42 +1.3

Or see this region's nucleotide sequence