Strain Fitness in Escherichia coli ECRC62 around BNILDI_22735

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcyoE and BNILDI_22735 are separated by 184 nucleotidesBNILDI_22735 and BNILDI_22740 overlap by 17 nucleotidesBNILDI_22740 and BNILDI_22745 are separated by 55 nucleotides BNILDI_22730: cyoE - heme o synthase, at 4,575,002 to 4,575,892 cyoE BNILDI_22735: BNILDI_22735 - DUF1778 domain-containing protein, at 4,576,077 to 4,576,388 _22735 BNILDI_22740: BNILDI_22740 - N-acetyltransferase, at 4,576,372 to 4,576,914 _22740 BNILDI_22745: BNILDI_22745 - sel1 repeat family protein, at 4,576,970 to 4,577,941 _22745 Position (kb) 4576 4577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4575.122 kb on + strand, within cyoEat 4575.123 kb on - strand, within cyoEat 4575.169 kb on + strand, within cyoEat 4575.177 kb on - strand, within cyoEat 4575.295 kb on + strand, within cyoEat 4575.296 kb on - strand, within cyoEat 4575.534 kb on - strand, within cyoEat 4575.557 kb on - strand, within cyoEat 4575.597 kb on + strand, within cyoEat 4575.635 kb on + strand, within cyoEat 4575.695 kb on - strand, within cyoEat 4575.698 kb on + strand, within cyoEat 4575.736 kb on - strand, within cyoEat 4575.739 kb on + strand, within cyoEat 4575.757 kb on + strand, within cyoEat 4575.806 kb on - strandat 4575.869 kb on - strandat 4575.904 kb on + strandat 4575.919 kb on - strandat 4575.919 kb on - strandat 4576.024 kb on + strandat 4576.148 kb on + strand, within BNILDI_22735at 4576.423 kb on + strandat 4576.424 kb on - strandat 4576.434 kb on + strand, within BNILDI_22740at 4576.437 kb on + strand, within BNILDI_22740at 4576.437 kb on + strand, within BNILDI_22740at 4576.441 kb on + strand, within BNILDI_22740at 4576.522 kb on - strand, within BNILDI_22740at 4576.727 kb on + strand, within BNILDI_22740at 4576.727 kb on + strand, within BNILDI_22740at 4576.728 kb on - strand, within BNILDI_22740at 4576.728 kb on - strand, within BNILDI_22740at 4576.874 kb on + strandat 4576.875 kb on - strandat 4576.912 kb on + strandat 4576.921 kb on - strandat 4577.058 kb on - strandat 4577.058 kb on - strandat 4577.344 kb on + strand, within BNILDI_22745

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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4,575,122 + cyoE BNILDI_22730 0.13 +0.9
4,575,123 - cyoE BNILDI_22730 0.14 -1.0
4,575,169 + cyoE BNILDI_22730 0.19 -0.1
4,575,177 - cyoE BNILDI_22730 0.20 +0.9
4,575,295 + cyoE BNILDI_22730 0.33 -0.7
4,575,296 - cyoE BNILDI_22730 0.33 -2.8
4,575,534 - cyoE BNILDI_22730 0.60 +2.2
4,575,557 - cyoE BNILDI_22730 0.62 -1.7
4,575,597 + cyoE BNILDI_22730 0.67 -0.1
4,575,635 + cyoE BNILDI_22730 0.71 -1.3
4,575,695 - cyoE BNILDI_22730 0.78 +1.1
4,575,698 + cyoE BNILDI_22730 0.78 +0.5
4,575,736 - cyoE BNILDI_22730 0.82 +1.5
4,575,739 + cyoE BNILDI_22730 0.83 -1.0
4,575,757 + cyoE BNILDI_22730 0.85 +0.6
4,575,806 - -0.4
4,575,869 - -1.6
4,575,904 + -2.9
4,575,919 - +1.7
4,575,919 - +1.3
4,576,024 + -0.5
4,576,148 + BNILDI_22735 0.23 -1.6
4,576,423 + -0.2
4,576,424 - +1.4
4,576,434 + BNILDI_22740 0.11 +1.1
4,576,437 + BNILDI_22740 0.12 +0.2
4,576,437 + BNILDI_22740 0.12 -0.1
4,576,441 + BNILDI_22740 0.13 -1.7
4,576,522 - BNILDI_22740 0.28 +0.2
4,576,727 + BNILDI_22740 0.65 +0.9
4,576,727 + BNILDI_22740 0.65 +0.3
4,576,728 - BNILDI_22740 0.66 -0.1
4,576,728 - BNILDI_22740 0.66 +0.2
4,576,874 + +1.9
4,576,875 - +2.5
4,576,912 + +0.2
4,576,921 - -2.1
4,577,058 - -1.1
4,577,058 - -2.3
4,577,344 + BNILDI_22745 0.38 +0.9

Or see this region's nucleotide sequence