Strain Fitness in Escherichia coli ECRC62 around BNILDI_19565

Experiment: RB68

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RB68
3,924,960	+	ycdZ	BNILDI_19555	0.56	-0.6
3,925,046	+	ycdZ	BNILDI_19555	0.72	-2.5
3,925,079	-	ycdZ	BNILDI_19555	0.78	+0.3
3,925,153	+				+0.7
3,925,153	+				+2.8
3,925,153	+				+0.8
3,925,580	+	ycdY	BNILDI_19560	0.57	+1.3
3,925,775	-				-0.6
3,925,818	+				+0.2
3,925,824	-				-0.5
3,925,824	-				+0.0
3,925,838	+				-0.3
3,925,838	+				-0.9
3,925,960	+	ycdX	BNILDI_19565	0.16	+0.9
3,926,013	-	ycdX	BNILDI_19565	0.23	+2.3
3,926,105	-	ycdX	BNILDI_19565	0.36	-0.2
3,926,162	+	ycdX	BNILDI_19565	0.43	+0.3
3,926,170	-	ycdX	BNILDI_19565	0.45	+0.7
3,926,192	+	ycdX	BNILDI_19565	0.48	+1.6
3,926,193	-	ycdX	BNILDI_19565	0.48	-0.6
3,926,195	+	ycdX	BNILDI_19565	0.48	+1.8
3,926,196	-	ycdX	BNILDI_19565	0.48	+0.1
3,926,196	-	ycdX	BNILDI_19565	0.48	-0.4
3,926,198	-	ycdX	BNILDI_19565	0.48	-0.3
3,926,198	-	ycdX	BNILDI_19565	0.48	-1.3
3,926,408	-	ycdX	BNILDI_19565	0.77	+0.6
3,926,408	-	ycdX	BNILDI_19565	0.77	-1.3
3,926,482	+	ycdX	BNILDI_19565	0.87	+0.0
3,926,528	-				-0.4
3,926,528	-				-0.4
3,926,528	-				+0.0
3,926,528	-				-1.2
3,926,529	+				+0.2
3,926,530	-				-1.2
3,926,557	+				-0.2
3,926,557	+				+2.5
3,926,578	+				+2.1
3,926,578	+				+0.9
3,926,578	+				+3.0
3,926,578	+				-1.5
3,926,578	+				+1.3
3,926,579	-				-0.3
3,926,579	-				+0.3
3,926,579	-				-1.6
3,926,579	-				-0.7
3,926,634	+				+2.3
3,926,635	-				+1.3
3,926,695	+				-0.4
3,926,695	+				+1.6
3,926,936	+	ghrA	BNILDI_19570	0.32	+1.7
3,926,951	-	ghrA	BNILDI_19570	0.34	+0.9
3,927,124	+	ghrA	BNILDI_19570	0.52	-0.6
3,927,135	-	ghrA	BNILDI_19570	0.53	+2.8
3,927,177	+	ghrA	BNILDI_19570	0.58	+0.3
3,927,205	+	ghrA	BNILDI_19570	0.61	+0.3
3,927,205	+	ghrA	BNILDI_19570	0.61	+0.1
3,927,267	+	ghrA	BNILDI_19570	0.68	-0.5
3,927,267	+	ghrA	BNILDI_19570	0.68	-0.9
3,927,267	+	ghrA	BNILDI_19570	0.68	-0.2
3,927,267	+	ghrA	BNILDI_19570	0.68	+1.4
3,927,268	-	ghrA	BNILDI_19570	0.68	-0.7
3,927,268	-	ghrA	BNILDI_19570	0.68	-0.3
3,927,350	+	ghrA	BNILDI_19570	0.76	-0.3
3,927,400	+	ghrA	BNILDI_19570	0.82	+2.3
3,927,443	+	ghrA	BNILDI_19570	0.86	-2.6
3,927,443	+	ghrA	BNILDI_19570	0.86	-0.8
3,927,466	+	ghrA	BNILDI_19570	0.89	+1.1
3,927,555	+				+0.5