Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cbl and Asn_trna are separated by 37 nucleotides Asn_trna and yeeO are separated by 193 nucleotides yeeO and Asn_trna are separated by 100 nucleotides Asn_trna and ycdB are separated by 453 nucleotides
BNILDI_14895: cbl - HTH-type transcriptional regulator Cbl, at 3,003,787 to 3,004,737
cbl
BNILDI_14900: Asn_trna - tRNA-Asn(gtt), at 3,004,775 to 3,004,850
_trna
BNILDI_14905: yeeO - toxic metabolite efflux MATE transporter YeeO, at 3,005,044 to 3,006,498
yeeO
BNILDI_14910: Asn_trna - tRNA-Asn(gtt), at 3,006,599 to 3,006,674
_trna
BNILDI_14915: ycdB - putative transcriptional regulatory protein YcdB, at 3,007,128 to 3,007,844
ycdB
Position (kb)
3005
3006
3007 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3004.048 kb on - strand, within cbl at 3004.090 kb on - strand, within cbl at 3004.105 kb on - strand, within cbl at 3004.105 kb on - strand, within cbl at 3004.164 kb on - strand, within cbl at 3004.291 kb on - strand, within cbl at 3004.291 kb on - strand, within cbl at 3004.329 kb on + strand, within cbl at 3004.330 kb on - strand, within cbl at 3004.368 kb on - strand, within cbl at 3004.444 kb on - strand, within cbl at 3004.446 kb on + strand, within cbl at 3004.446 kb on + strand, within cbl at 3004.446 kb on + strand, within cbl at 3004.447 kb on - strand, within cbl at 3004.447 kb on - strand, within cbl at 3004.447 kb on - strand, within cbl at 3004.448 kb on + strand, within cbl at 3004.451 kb on + strand, within cbl at 3004.451 kb on + strand, within cbl at 3004.452 kb on - strand, within cbl at 3004.452 kb on - strand, within cbl at 3004.476 kb on + strand, within cbl at 3004.483 kb on + strand, within cbl at 3004.483 kb on + strand, within cbl at 3004.587 kb on + strand, within cbl at 3004.587 kb on + strand, within cbl at 3004.587 kb on + strand, within cbl at 3004.588 kb on - strand, within cbl at 3004.591 kb on - strand, within cbl at 3004.591 kb on - strand, within cbl at 3004.629 kb on + strand, within cbl at 3004.634 kb on - strand, within cbl at 3004.634 kb on - strand, within cbl at 3004.634 kb on - strand, within cbl at 3004.634 kb on - strand, within cbl at 3004.634 kb on - strand, within cbl at 3004.659 kb on + strand at 3004.684 kb on - strand at 3004.931 kb on + strand at 3005.033 kb on + strand at 3005.111 kb on - strand at 3005.305 kb on - strand, within yeeO at 3005.307 kb on + strand, within yeeO at 3005.325 kb on + strand, within yeeO at 3005.326 kb on - strand, within yeeO at 3005.419 kb on - strand, within yeeO at 3005.586 kb on - strand, within yeeO at 3005.623 kb on - strand, within yeeO at 3005.628 kb on + strand, within yeeO at 3005.713 kb on + strand, within yeeO at 3005.962 kb on - strand, within yeeO at 3006.246 kb on + strand, within yeeO at 3006.247 kb on - strand, within yeeO at 3006.314 kb on + strand, within yeeO at 3006.315 kb on - strand, within yeeO at 3006.322 kb on + strand, within yeeO at 3006.579 kb on - strand at 3006.879 kb on - strand at 3006.883 kb on + strand at 3006.920 kb on - strand at 3007.077 kb on + strand at 3007.337 kb on + strand, within ycdB at 3007.458 kb on - strand, within ycdB
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 3,004,048 - cbl BNILDI_14895 0.27 -1.9 3,004,090 - cbl BNILDI_14895 0.32 -0.8 3,004,105 - cbl BNILDI_14895 0.33 -0.4 3,004,105 - cbl BNILDI_14895 0.33 +0.8 3,004,164 - cbl BNILDI_14895 0.40 -2.3 3,004,291 - cbl BNILDI_14895 0.53 +0.9 3,004,291 - cbl BNILDI_14895 0.53 +0.6 3,004,329 + cbl BNILDI_14895 0.57 +1.3 3,004,330 - cbl BNILDI_14895 0.57 -1.3 3,004,368 - cbl BNILDI_14895 0.61 -0.7 3,004,444 - cbl BNILDI_14895 0.69 -1.4 3,004,446 + cbl BNILDI_14895 0.69 -0.4 3,004,446 + cbl BNILDI_14895 0.69 +1.3 3,004,446 + cbl BNILDI_14895 0.69 +0.9 3,004,447 - cbl BNILDI_14895 0.69 +0.6 3,004,447 - cbl BNILDI_14895 0.69 -0.5 3,004,447 - cbl BNILDI_14895 0.69 -1.1 3,004,448 + cbl BNILDI_14895 0.70 -0.1 3,004,451 + cbl BNILDI_14895 0.70 -0.3 3,004,451 + cbl BNILDI_14895 0.70 -0.2 3,004,452 - cbl BNILDI_14895 0.70 -1.1 3,004,452 - cbl BNILDI_14895 0.70 -0.6 3,004,476 + cbl BNILDI_14895 0.72 +2.3 3,004,483 + cbl BNILDI_14895 0.73 +0.3 3,004,483 + cbl BNILDI_14895 0.73 +2.4 3,004,587 + cbl BNILDI_14895 0.84 +0.3 3,004,587 + cbl BNILDI_14895 0.84 +0.1 3,004,587 + cbl BNILDI_14895 0.84 +1.9 3,004,588 - cbl BNILDI_14895 0.84 +0.2 3,004,591 - cbl BNILDI_14895 0.85 -0.1 3,004,591 - cbl BNILDI_14895 0.85 -0.4 3,004,629 + cbl BNILDI_14895 0.89 +0.1 3,004,634 - cbl BNILDI_14895 0.89 +2.3 3,004,634 - cbl BNILDI_14895 0.89 +0.6 3,004,634 - cbl BNILDI_14895 0.89 +0.9 3,004,634 - cbl BNILDI_14895 0.89 -0.1 3,004,634 - cbl BNILDI_14895 0.89 -1.1 3,004,659 + -1.2 3,004,684 - +1.9 3,004,931 + +2.3 3,005,033 + +0.2 3,005,111 - +0.6 3,005,305 - yeeO BNILDI_14905 0.18 +0.1 3,005,307 + yeeO BNILDI_14905 0.18 -2.2 3,005,325 + yeeO BNILDI_14905 0.19 +0.3 3,005,326 - yeeO BNILDI_14905 0.19 -1.0 3,005,419 - yeeO BNILDI_14905 0.26 -0.2 3,005,586 - yeeO BNILDI_14905 0.37 -1.3 3,005,623 - yeeO BNILDI_14905 0.40 -0.1 3,005,628 + yeeO BNILDI_14905 0.40 +0.2 3,005,713 + yeeO BNILDI_14905 0.46 +0.9 3,005,962 - yeeO BNILDI_14905 0.63 +1.9 3,006,246 + yeeO BNILDI_14905 0.83 +0.1 3,006,247 - yeeO BNILDI_14905 0.83 -0.3 3,006,314 + yeeO BNILDI_14905 0.87 +0.1 3,006,315 - yeeO BNILDI_14905 0.87 +0.6 3,006,322 + yeeO BNILDI_14905 0.88 +2.3 3,006,579 - +1.9 3,006,879 - +0.5 3,006,883 + +0.8 3,006,920 - +0.1 3,007,077 + -0.9 3,007,337 + ycdB BNILDI_14915 0.29 +0.3 3,007,458 - ycdB BNILDI_14915 0.46 +1.8
Or see this region's nucleotide sequence