Strain Fitness in Escherichia coli ECRC62 around BNILDI_14905

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcbl and Asn_trna are separated by 37 nucleotidesAsn_trna and yeeO are separated by 193 nucleotidesyeeO and Asn_trna are separated by 100 nucleotidesAsn_trna and ycdB are separated by 453 nucleotides BNILDI_14895: cbl - HTH-type transcriptional regulator Cbl, at 3,003,787 to 3,004,737 cbl BNILDI_14900: Asn_trna - tRNA-Asn(gtt), at 3,004,775 to 3,004,850 _trna BNILDI_14905: yeeO - toxic metabolite efflux MATE transporter YeeO, at 3,005,044 to 3,006,498 yeeO BNILDI_14910: Asn_trna - tRNA-Asn(gtt), at 3,006,599 to 3,006,674 _trna BNILDI_14915: ycdB - putative transcriptional regulatory protein YcdB, at 3,007,128 to 3,007,844 ycdB Position (kb) 3005 3006 3007Strain fitness (log2 ratio) -2 -1 0 1 2at 3004.048 kb on - strand, within cblat 3004.090 kb on - strand, within cblat 3004.105 kb on - strand, within cblat 3004.105 kb on - strand, within cblat 3004.164 kb on - strand, within cblat 3004.291 kb on - strand, within cblat 3004.291 kb on - strand, within cblat 3004.329 kb on + strand, within cblat 3004.330 kb on - strand, within cblat 3004.368 kb on - strand, within cblat 3004.444 kb on - strand, within cblat 3004.446 kb on + strand, within cblat 3004.446 kb on + strand, within cblat 3004.446 kb on + strand, within cblat 3004.447 kb on - strand, within cblat 3004.447 kb on - strand, within cblat 3004.447 kb on - strand, within cblat 3004.448 kb on + strand, within cblat 3004.451 kb on + strand, within cblat 3004.451 kb on + strand, within cblat 3004.452 kb on - strand, within cblat 3004.452 kb on - strand, within cblat 3004.476 kb on + strand, within cblat 3004.483 kb on + strand, within cblat 3004.483 kb on + strand, within cblat 3004.587 kb on + strand, within cblat 3004.587 kb on + strand, within cblat 3004.587 kb on + strand, within cblat 3004.588 kb on - strand, within cblat 3004.591 kb on - strand, within cblat 3004.591 kb on - strand, within cblat 3004.629 kb on + strand, within cblat 3004.634 kb on - strand, within cblat 3004.634 kb on - strand, within cblat 3004.634 kb on - strand, within cblat 3004.634 kb on - strand, within cblat 3004.634 kb on - strand, within cblat 3004.659 kb on + strandat 3004.684 kb on - strandat 3004.931 kb on + strandat 3005.033 kb on + strandat 3005.111 kb on - strandat 3005.305 kb on - strand, within yeeOat 3005.307 kb on + strand, within yeeOat 3005.325 kb on + strand, within yeeOat 3005.326 kb on - strand, within yeeOat 3005.419 kb on - strand, within yeeOat 3005.586 kb on - strand, within yeeOat 3005.623 kb on - strand, within yeeOat 3005.628 kb on + strand, within yeeOat 3005.713 kb on + strand, within yeeOat 3005.962 kb on - strand, within yeeOat 3006.246 kb on + strand, within yeeOat 3006.247 kb on - strand, within yeeOat 3006.314 kb on + strand, within yeeOat 3006.315 kb on - strand, within yeeOat 3006.322 kb on + strand, within yeeOat 3006.579 kb on - strandat 3006.879 kb on - strandat 3006.883 kb on + strandat 3006.920 kb on - strandat 3007.077 kb on + strandat 3007.337 kb on + strand, within ycdBat 3007.458 kb on - strand, within ycdB

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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3,004,048 - cbl BNILDI_14895 0.27 -1.9
3,004,090 - cbl BNILDI_14895 0.32 -0.8
3,004,105 - cbl BNILDI_14895 0.33 -0.4
3,004,105 - cbl BNILDI_14895 0.33 +0.8
3,004,164 - cbl BNILDI_14895 0.40 -2.3
3,004,291 - cbl BNILDI_14895 0.53 +0.9
3,004,291 - cbl BNILDI_14895 0.53 +0.6
3,004,329 + cbl BNILDI_14895 0.57 +1.3
3,004,330 - cbl BNILDI_14895 0.57 -1.3
3,004,368 - cbl BNILDI_14895 0.61 -0.7
3,004,444 - cbl BNILDI_14895 0.69 -1.4
3,004,446 + cbl BNILDI_14895 0.69 -0.4
3,004,446 + cbl BNILDI_14895 0.69 +1.3
3,004,446 + cbl BNILDI_14895 0.69 +0.9
3,004,447 - cbl BNILDI_14895 0.69 +0.6
3,004,447 - cbl BNILDI_14895 0.69 -0.5
3,004,447 - cbl BNILDI_14895 0.69 -1.1
3,004,448 + cbl BNILDI_14895 0.70 -0.1
3,004,451 + cbl BNILDI_14895 0.70 -0.3
3,004,451 + cbl BNILDI_14895 0.70 -0.2
3,004,452 - cbl BNILDI_14895 0.70 -1.1
3,004,452 - cbl BNILDI_14895 0.70 -0.6
3,004,476 + cbl BNILDI_14895 0.72 +2.3
3,004,483 + cbl BNILDI_14895 0.73 +0.3
3,004,483 + cbl BNILDI_14895 0.73 +2.4
3,004,587 + cbl BNILDI_14895 0.84 +0.3
3,004,587 + cbl BNILDI_14895 0.84 +0.1
3,004,587 + cbl BNILDI_14895 0.84 +1.9
3,004,588 - cbl BNILDI_14895 0.84 +0.2
3,004,591 - cbl BNILDI_14895 0.85 -0.1
3,004,591 - cbl BNILDI_14895 0.85 -0.4
3,004,629 + cbl BNILDI_14895 0.89 +0.1
3,004,634 - cbl BNILDI_14895 0.89 +2.3
3,004,634 - cbl BNILDI_14895 0.89 +0.6
3,004,634 - cbl BNILDI_14895 0.89 +0.9
3,004,634 - cbl BNILDI_14895 0.89 -0.1
3,004,634 - cbl BNILDI_14895 0.89 -1.1
3,004,659 + -1.2
3,004,684 - +1.9
3,004,931 + +2.3
3,005,033 + +0.2
3,005,111 - +0.6
3,005,305 - yeeO BNILDI_14905 0.18 +0.1
3,005,307 + yeeO BNILDI_14905 0.18 -2.2
3,005,325 + yeeO BNILDI_14905 0.19 +0.3
3,005,326 - yeeO BNILDI_14905 0.19 -1.0
3,005,419 - yeeO BNILDI_14905 0.26 -0.2
3,005,586 - yeeO BNILDI_14905 0.37 -1.3
3,005,623 - yeeO BNILDI_14905 0.40 -0.1
3,005,628 + yeeO BNILDI_14905 0.40 +0.2
3,005,713 + yeeO BNILDI_14905 0.46 +0.9
3,005,962 - yeeO BNILDI_14905 0.63 +1.9
3,006,246 + yeeO BNILDI_14905 0.83 +0.1
3,006,247 - yeeO BNILDI_14905 0.83 -0.3
3,006,314 + yeeO BNILDI_14905 0.87 +0.1
3,006,315 - yeeO BNILDI_14905 0.87 +0.6
3,006,322 + yeeO BNILDI_14905 0.88 +2.3
3,006,579 - +1.9
3,006,879 - +0.5
3,006,883 + +0.8
3,006,920 - +0.1
3,007,077 + -0.9
3,007,337 + ycdB BNILDI_14915 0.29 +0.3
3,007,458 - ycdB BNILDI_14915 0.46 +1.8

Or see this region's nucleotide sequence