Strain Fitness in Escherichia coli ECRC62 around BNILDI_12540

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteutE and eutJ are separated by 10 nucleotideseutJ and eutG overlap by 11 nucleotides BNILDI_12535: eutE - Acetaldehyde dehydrogenase (acetylating) EutE, at 2,515,157 to 2,516,560 eutE BNILDI_12540: eutJ - ethanolamine utilization protein EutJ, at 2,516,571 to 2,517,407 eutJ BNILDI_12545: eutG - ethanolamine utilization ethanol dehydrogenase EutG, at 2,517,397 to 2,518,584 eutG Position (kb) 2516 2517 2518Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2515.581 kb on + strand, within eutEat 2515.581 kb on + strand, within eutEat 2515.585 kb on + strand, within eutEat 2515.726 kb on + strand, within eutEat 2515.977 kb on + strand, within eutEat 2515.994 kb on - strand, within eutEat 2516.387 kb on - strand, within eutEat 2516.532 kb on + strandat 2516.535 kb on + strandat 2516.993 kb on - strand, within eutJat 2516.993 kb on - strand, within eutJat 2516.993 kb on - strand, within eutJat 2516.993 kb on - strand, within eutJat 2517.114 kb on - strand, within eutJat 2517.114 kb on - strand, within eutJat 2517.138 kb on + strand, within eutJat 2517.139 kb on - strand, within eutJat 2517.244 kb on + strand, within eutJat 2517.244 kb on + strand, within eutJat 2517.266 kb on + strand, within eutJat 2517.267 kb on - strand, within eutJat 2517.325 kb on + strandat 2517.368 kb on + strandat 2517.394 kb on + strandat 2517.394 kb on + strandat 2517.394 kb on + strandat 2517.395 kb on - strandat 2517.395 kb on - strandat 2517.395 kb on - strandat 2517.647 kb on + strand, within eutGat 2518.057 kb on + strand, within eutGat 2518.058 kb on - strand, within eutGat 2518.058 kb on - strand, within eutGat 2518.075 kb on - strand, within eutGat 2518.148 kb on - strand, within eutGat 2518.195 kb on - strand, within eutGat 2518.195 kb on - strand, within eutGat 2518.273 kb on - strand, within eutG

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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2,515,581 + eutE BNILDI_12535 0.30 -0.5
2,515,581 + eutE BNILDI_12535 0.30 -0.3
2,515,585 + eutE BNILDI_12535 0.30 +2.3
2,515,726 + eutE BNILDI_12535 0.41 -0.4
2,515,977 + eutE BNILDI_12535 0.58 -1.5
2,515,994 - eutE BNILDI_12535 0.60 +0.0
2,516,387 - eutE BNILDI_12535 0.88 -4.2
2,516,532 + -0.8
2,516,535 + -0.9
2,516,993 - eutJ BNILDI_12540 0.50 -0.5
2,516,993 - eutJ BNILDI_12540 0.50 +0.5
2,516,993 - eutJ BNILDI_12540 0.50 +2.1
2,516,993 - eutJ BNILDI_12540 0.50 +2.1
2,517,114 - eutJ BNILDI_12540 0.65 -1.3
2,517,114 - eutJ BNILDI_12540 0.65 +1.3
2,517,138 + eutJ BNILDI_12540 0.68 -1.7
2,517,139 - eutJ BNILDI_12540 0.68 +1.2
2,517,244 + eutJ BNILDI_12540 0.80 +0.2
2,517,244 + eutJ BNILDI_12540 0.80 -0.4
2,517,266 + eutJ BNILDI_12540 0.83 -1.1
2,517,267 - eutJ BNILDI_12540 0.83 -0.4
2,517,325 + +1.8
2,517,368 + -0.7
2,517,394 + -0.9
2,517,394 + -0.3
2,517,394 + +0.2
2,517,395 - -0.7
2,517,395 - +0.3
2,517,395 - +0.3
2,517,647 + eutG BNILDI_12545 0.21 +1.6
2,518,057 + eutG BNILDI_12545 0.56 -0.6
2,518,058 - eutG BNILDI_12545 0.56 +0.3
2,518,058 - eutG BNILDI_12545 0.56 +1.3
2,518,075 - eutG BNILDI_12545 0.57 +0.8
2,518,148 - eutG BNILDI_12545 0.63 -0.2
2,518,195 - eutG BNILDI_12545 0.67 -0.0
2,518,195 - eutG BNILDI_12545 0.67 +1.2
2,518,273 - eutG BNILDI_12545 0.74 -0.4

Or see this region's nucleotide sequence