Strain Fitness in Escherichia coli ECRC62 around BNILDI_11790

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpssA and pssL overlap by 17 nucleotidespssL and pat are separated by 88 nucleotides BNILDI_11785: pssA - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 2,361,793 to 2,363,148 pssA BNILDI_11790: pssL - Protein PssL, at 2,363,132 to 2,363,173 pssL BNILDI_11795: pat - protein lysine acetyltransferase, at 2,363,262 to 2,365,922 pat Position (kb) 2363 2364Strain fitness (log2 ratio) -2 -1 0 1 2at 2363.260 kb on - strandat 2363.295 kb on - strandat 2363.385 kb on - strandat 2363.421 kb on - strandat 2363.422 kb on + strandat 2363.422 kb on + strandat 2363.423 kb on - strandat 2363.423 kb on - strandat 2363.426 kb on + strandat 2363.454 kb on + strandat 2363.565 kb on - strand, within patat 2363.637 kb on - strand, within patat 2363.660 kb on - strand, within patat 2363.769 kb on + strand, within patat 2363.844 kb on - strand, within patat 2364.040 kb on + strand, within pat

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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2,363,260 - +0.7
2,363,295 - -0.9
2,363,385 - +0.7
2,363,421 - +0.7
2,363,422 + +0.7
2,363,422 + +0.8
2,363,423 - -2.1
2,363,423 - +0.5
2,363,426 + -1.3
2,363,454 + +0.7
2,363,565 - pat BNILDI_11795 0.11 +0.7
2,363,637 - pat BNILDI_11795 0.14 -1.4
2,363,660 - pat BNILDI_11795 0.15 +2.4
2,363,769 + pat BNILDI_11795 0.19 +2.7
2,363,844 - pat BNILDI_11795 0.22 -0.1
2,364,040 + pat BNILDI_11795 0.29 -0.2

Or see this region's nucleotide sequence