Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nanS and nanM are separated by 63 nucleotides nanM and nanC are separated by 19 nucleotides
BNILDI_07635: nanS - putative 9-O-acetyl-N-acetylneuraminic acid deacetylase, at 1,525,522 to 1,526,502
nanS
BNILDI_07640: nanM - N-acetylneuraminate epimerase, at 1,526,566 to 1,527,672
nanM
BNILDI_07645: nanC - N-acetylneuraminic acid outer membrane channel NanC, at 1,527,692 to 1,528,408
nanC
Position (kb)
1526
1527
1528 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1525.779 kb on + strand, within nanS at 1525.787 kb on + strand, within nanS at 1525.855 kb on - strand, within nanS at 1525.855 kb on - strand, within nanS at 1525.858 kb on - strand, within nanS at 1525.914 kb on + strand, within nanS at 1525.950 kb on + strand, within nanS at 1525.951 kb on + strand, within nanS at 1526.045 kb on + strand, within nanS at 1526.046 kb on - strand, within nanS at 1526.047 kb on + strand, within nanS at 1526.105 kb on + strand, within nanS at 1526.194 kb on + strand, within nanS at 1526.209 kb on - strand, within nanS at 1526.234 kb on + strand, within nanS at 1526.235 kb on - strand, within nanS at 1526.270 kb on + strand, within nanS at 1526.316 kb on + strand, within nanS at 1526.316 kb on + strand, within nanS at 1526.355 kb on + strand, within nanS at 1526.356 kb on - strand, within nanS at 1526.356 kb on - strand, within nanS at 1526.472 kb on - strand at 1526.474 kb on + strand at 1526.503 kb on - strand at 1526.503 kb on - strand at 1526.580 kb on + strand at 1526.760 kb on + strand, within nanM at 1527.344 kb on + strand, within nanM at 1527.345 kb on - strand, within nanM at 1527.489 kb on + strand, within nanM at 1527.515 kb on + strand, within nanM at 1527.535 kb on - strand, within nanM at 1527.816 kb on + strand, within nanC at 1527.817 kb on - strand, within nanC at 1527.821 kb on + strand, within nanC at 1527.889 kb on - strand, within nanC at 1527.923 kb on - strand, within nanC at 1528.070 kb on + strand, within nanC at 1528.102 kb on + strand, within nanC at 1528.232 kb on - strand, within nanC at 1528.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 1,525,779 + nanS BNILDI_07635 0.26 +0.3 1,525,787 + nanS BNILDI_07635 0.27 +0.8 1,525,855 - nanS BNILDI_07635 0.34 -0.6 1,525,855 - nanS BNILDI_07635 0.34 +0.5 1,525,858 - nanS BNILDI_07635 0.34 +0.7 1,525,914 + nanS BNILDI_07635 0.40 +0.6 1,525,950 + nanS BNILDI_07635 0.44 +0.4 1,525,951 + nanS BNILDI_07635 0.44 +1.2 1,526,045 + nanS BNILDI_07635 0.53 -1.8 1,526,046 - nanS BNILDI_07635 0.53 -0.7 1,526,047 + nanS BNILDI_07635 0.54 -1.4 1,526,105 + nanS BNILDI_07635 0.59 -2.3 1,526,194 + nanS BNILDI_07635 0.69 +2.1 1,526,209 - nanS BNILDI_07635 0.70 +1.5 1,526,234 + nanS BNILDI_07635 0.73 -0.5 1,526,235 - nanS BNILDI_07635 0.73 +0.8 1,526,270 + nanS BNILDI_07635 0.76 -2.3 1,526,316 + nanS BNILDI_07635 0.81 -0.6 1,526,316 + nanS BNILDI_07635 0.81 -0.0 1,526,355 + nanS BNILDI_07635 0.85 +0.1 1,526,356 - nanS BNILDI_07635 0.85 +0.0 1,526,356 - nanS BNILDI_07635 0.85 -0.7 1,526,472 - +0.8 1,526,474 + +0.8 1,526,503 - +0.4 1,526,503 - +0.8 1,526,580 + -0.8 1,526,760 + nanM BNILDI_07640 0.18 +0.1 1,527,344 + nanM BNILDI_07640 0.70 -0.2 1,527,345 - nanM BNILDI_07640 0.70 +0.6 1,527,489 + nanM BNILDI_07640 0.83 -0.3 1,527,515 + nanM BNILDI_07640 0.86 -0.7 1,527,535 - nanM BNILDI_07640 0.88 +2.8 1,527,816 + nanC BNILDI_07645 0.17 -1.5 1,527,817 - nanC BNILDI_07645 0.17 -0.0 1,527,821 + nanC BNILDI_07645 0.18 -0.3 1,527,889 - nanC BNILDI_07645 0.27 +0.9 1,527,923 - nanC BNILDI_07645 0.32 -0.5 1,528,070 + nanC BNILDI_07645 0.53 -0.4 1,528,102 + nanC BNILDI_07645 0.57 -1.3 1,528,232 - nanC BNILDI_07645 0.75 +0.2 1,528,660 - +1.0
Or see this region's nucleotide sequence