Strain Fitness in Escherichia coli ECRC62 around BNILDI_07440

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrraB and yjgM are separated by 45 nucleotidesyjgM and yjgN are separated by 192 nucleotidesyjgN and valS are separated by 55 nucleotides BNILDI_07430: rraB - ribonuclease E inhibitor RraB, at 1,480,605 to 1,481,021 rraB BNILDI_07435: yjgM - Uncharacterized N-acetyltransferase YjgM, at 1,481,067 to 1,481,570 yjgM BNILDI_07440: yjgN - Inner membrane protein YjgN, at 1,481,763 to 1,482,959 yjgN BNILDI_07445: valS - valine--tRNA ligase, at 1,483,015 to 1,485,870 valS Position (kb) 1481 1482 1483Strain fitness (log2 ratio) -1 0 1 2 3at 1480.926 kb on + strand, within rraBat 1480.944 kb on + strand, within rraBat 1480.944 kb on + strand, within rraBat 1480.945 kb on - strand, within rraBat 1481.101 kb on - strandat 1481.125 kb on + strand, within yjgMat 1481.125 kb on + strand, within yjgMat 1481.133 kb on - strand, within yjgMat 1481.156 kb on - strand, within yjgMat 1481.197 kb on + strand, within yjgMat 1481.290 kb on + strand, within yjgMat 1481.291 kb on - strand, within yjgMat 1481.386 kb on + strand, within yjgMat 1481.386 kb on + strand, within yjgMat 1481.405 kb on + strand, within yjgMat 1481.408 kb on - strand, within yjgMat 1481.408 kb on - strand, within yjgMat 1481.408 kb on - strand, within yjgMat 1481.417 kb on - strand, within yjgMat 1481.449 kb on + strand, within yjgMat 1481.474 kb on - strand, within yjgMat 1481.542 kb on - strandat 1481.628 kb on - strandat 1482.097 kb on + strand, within yjgNat 1482.317 kb on - strand, within yjgNat 1482.533 kb on + strand, within yjgNat 1482.847 kb on - strandat 1482.903 kb on - strandat 1482.935 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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1,480,926 + rraB BNILDI_07430 0.77 +2.0
1,480,944 + rraB BNILDI_07430 0.81 +0.7
1,480,944 + rraB BNILDI_07430 0.81 +1.8
1,480,945 - rraB BNILDI_07430 0.82 +1.1
1,481,101 - -0.9
1,481,125 + yjgM BNILDI_07435 0.12 +0.3
1,481,125 + yjgM BNILDI_07435 0.12 +0.0
1,481,133 - yjgM BNILDI_07435 0.13 -1.0
1,481,156 - yjgM BNILDI_07435 0.18 +2.8
1,481,197 + yjgM BNILDI_07435 0.26 +0.2
1,481,290 + yjgM BNILDI_07435 0.44 +0.8
1,481,291 - yjgM BNILDI_07435 0.44 -0.1
1,481,386 + yjgM BNILDI_07435 0.63 -0.5
1,481,386 + yjgM BNILDI_07435 0.63 +0.3
1,481,405 + yjgM BNILDI_07435 0.67 +0.2
1,481,408 - yjgM BNILDI_07435 0.68 +0.0
1,481,408 - yjgM BNILDI_07435 0.68 -0.1
1,481,408 - yjgM BNILDI_07435 0.68 +0.0
1,481,417 - yjgM BNILDI_07435 0.69 -0.7
1,481,449 + yjgM BNILDI_07435 0.76 +0.8
1,481,474 - yjgM BNILDI_07435 0.81 +0.5
1,481,542 - -0.4
1,481,628 - -0.7
1,482,097 + yjgN BNILDI_07440 0.28 +1.1
1,482,317 - yjgN BNILDI_07440 0.46 -1.7
1,482,533 + yjgN BNILDI_07440 0.64 -1.0
1,482,847 - -1.2
1,482,903 - -1.7
1,482,935 + -0.3

Or see this region's nucleotide sequence